View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10070_low_24 (Length: 425)

Name: NF10070_low_24
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10070_low_24
NF10070_low_24
[»] chr8 (2 HSPs)
chr8 (98-406)||(43291224-43291531)
chr8 (18-97)||(43291557-43291636)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 98 - 406
Target Start/End: Complemental strand, 43291531 - 43291224
Alignment:
Q  98 tccctagttttatagttttttaatgttgaagaatccagctgtgaaaattacaagaactgaatacaaagatattaatattgcaagttctaattcgagtttt 197  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43291531 tccctagttttatagttttttaatgttgaagaatctagctgtgaaaattacaagaactgaatacaaagatatgaatattgcaagttctaattcgagtttt 43291432  T
Q  198 aatatatctaaagtgttttaaaaagaagatcctatttatatgttattcataagaaataaacaaatataattggaagcatcaaaatgatccnnnnnnnnnn 297  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  43291431 aatatatctaaagtgttttaaaaagaagatcatatttatatgttattcataagaaataaacaaatataattggaagcatcaaaatgatcc-aaaaaaaat 43291333  T
Q  298 nnttgggatgatataggatatgagatattcctgaatgtgtccagggggaaagggtatgttctgttgaggcattattagctagctagagtctccggttgaa 397  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  43291332 aattgggatgatataggatatgagatattcctgaatgtgtccagggggaaaaggtatgttctgttgaggcattattagctagctagagtctcatgttgaa 43291233  T
Q  398 tgctcatgt 406  Q
    |||||||||    
T  43291232 tgctcatgt 43291224  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43291636 - 43291557
Alignment:
Q  18 ggtaaagaggtgaatttagtaatgttgattgtgaatgaaaataaacagagagaacatgggacaagagtagtagtattcta 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43291636 ggtaaagaggtcaatttagtaatgttgattgtgaatgaaaataaacagagagaacatgggacaagagtagtcgtattcta 43291557  T

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