View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_26 (Length: 417)
Name: NF10070_low_26
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 28430864 - 28431265
Alignment:
| Q |
16 |
tgtggcattattcaagagaatctattcacaggaagaagacaagaaaaacagggaaatgaaaagggaaacctagtagacttaaatactacagtgctaacaa |
115 |
Q |
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| T |
28430864 |
tgtggcattattcaagagaatctattcacaggaagaagacaagaaaaacagggaaatgaaaagggaaacctagtagacttaaatactacagtgctaacaa |
28430963 |
T |
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| Q |
116 |
caatttattattgtgtgagctgtggccattttatttaacaaatgaaatgacatgtattaatttgtggatatattttttcttcttgtcttaacattattca |
215 |
Q |
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| T |
28430964 |
caatttattattgtgtgagctgtggccattttatttaacaaatgaaatgacatgtattaatttgtggatatattttttcttcttgtcttaacattattca |
28431063 |
T |
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| Q |
216 |
tttttccctgcaggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggatatctttc |
315 |
Q |
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| T |
28431064 |
tttttccctgcaggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggatatctttc |
28431163 |
T |
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| Q |
316 |
cctgtatatgagcaggtgtgattatgatctgttgttgtggctcttagccttacactgaaatgattttacaaacgatcctatcataggcattggcaatgca |
415 |
Q |
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| T |
28431164 |
cctgtatatgagcaggtgtgattatgatctgttgttgtggctcttagccttacactgaaatgattttacaaacgatcctatcataggcattggcaatgca |
28431263 |
T |
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| Q |
416 |
tc |
417 |
Q |
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| T |
28431264 |
tc |
28431265 |
T |
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Back To:
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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 12973656 - 12973550
Alignment:
| Q |
227 |
aggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggatatctttccctgtatatga |
326 |
Q |
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|||| |||||||| ||| ||||||||||||| || ||||| || ||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |
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| T |
12973656 |
aggctgttgacatcaaaatccttggatccctcaacagagaagatttaaagaaaatttgtggggagaatcttcctgaatggatatcttttcctgtatatga |
12973557 |
T |
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| Q |
327 |
gcaggtg |
333 |
Q |
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| T |
12973556 |
gcaggtg |
12973550 |
T |
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