View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_27 (Length: 416)
Name: NF10070_low_27
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 36 - 400
Target Start/End: Complemental strand, 23251453 - 23251089
Alignment:
| Q |
36 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
135 |
Q |
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| T |
23251453 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
23251354 |
T |
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| Q |
136 |
ttgcttagcctgtattaagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggactttnnnnnnnggtctactacgacga |
235 |
Q |
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| T |
23251353 |
ttgcttagcctgtattaagttgaagaaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggactttaaaaaaaggtctgttacgacga |
23251254 |
T |
|
| Q |
236 |
tctgggctgtgacttcaattggggtgcattcgccgcatttcaccgtcatatcaaggattgtgatgcgaaccttgcttttatgtgtctgatttctgtgttt |
335 |
Q |
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| T |
23251253 |
tctgggctgtgacttcaattggggtgcattcgctgcatttcaccgtcatatcaaggattgtgatgcgaaccttgcttttatgtgtctgatttctgtgttt |
23251154 |
T |
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| Q |
336 |
tcatcctggcaaggaaaggtacaagagaagaatgaatgaaatttaagcagatgccagtaattaat |
400 |
Q |
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| T |
23251153 |
tcatcctggcaaggaaagctacaagagaagaatgaatgaaatttaagcagatgccagtaattaat |
23251089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 23266001 - 23265846
Alignment:
| Q |
61 |
ttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccatctttgcttagcctgtat--taagttg |
157 |
Q |
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| T |
23266001 |
ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttg |
23265902 |
T |
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| Q |
158 |
aaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
213 |
Q |
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| T |
23265901 |
aaagaggtaatatagcgtctcttgtcttattcttctcttctcttttgtaggacttt |
23265846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 400
Target Start/End: Complemental strand, 23257356 - 23257120
Alignment:
| Q |
177 |
tcttgtcttattcttctcttctcttttgtaggactttnnnnnnnggtctactacgacgatctgggctgtgacttcaattggggtgcattcgccgcatttc |
276 |
Q |
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| T |
23257356 |
tcttgtcttatttttct--tctcttttgtaggactttaaaaaaaagtctgttacgacgatctgggctgtgactgcaattggggtgcatacgccacatttc |
23257259 |
T |
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| Q |
277 |
accgtcatatcaaggattgtgat---------------gcgaaccttgcttttatgtgtctgatttctgtgttttcatcctggcaaggaaaggtacaaga |
361 |
Q |
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| T |
23257258 |
accgtaatatcaaggattgtgatcgtttccatgtgactgcgaacattgcttttctgtggctgatttctgtcttttcatcctggcaaggaaaggtaccaga |
23257159 |
T |
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| Q |
362 |
gaagaatgaatgaaatttaagcagatgccagtaattaat |
400 |
Q |
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| T |
23257158 |
gaagaatgaatgaaacttaagcagaaaccagtaattaat |
23257120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 23246898 - 23246770
Alignment:
| Q |
151 |
taagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggactttnnnnnnnggtctactacgacgatctgggctgtgactt |
250 |
Q |
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||||||| ||||||||| | |||| |||||||||| | ||||||||||||||||||||||| |||| ||| || | |||| |||||||| |
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| T |
23246898 |
taagttgtaggaggtaaaatagtgtatcttgtcttaattttctcttctcttttgtaggacttaaaaaaaaagtctgttaccactacctggactgtgactg |
23246799 |
T |
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| Q |
251 |
caattggggtgcattcgccgcatttcacc |
279 |
Q |
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| T |
23246798 |
caactggggtgcattcgccgcatttcacc |
23246770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 23247032 - 23246979
Alignment:
| Q |
46 |
agtgcatctcatcctttttattatatatgaaagaa-aatataattttggaattt |
98 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
23247032 |
agtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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