View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_34 (Length: 374)
Name: NF10070_low_34
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 28233524 - 28233180
Alignment:
| Q |
13 |
gagaccgagaaatgaatcatcacgagagaccacatctccaaaactggattgccggagacgaaagcggcagcgagatgctgaaaagagtatggagagtccg |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28233524 |
gagaccgagaaatgaatcatcacgagagaccacacctccaaaactggattgccggagacgaaagcggcagcgaaatgctgaaaagagtatggagagtccg |
28233425 |
T |
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| Q |
113 |
acctttcatcctccctaagccgcttcacagagttcctctccgcgtcggcaacgtcctcgaactcgtcggtccttcgccatccgccaaaactcaaatcctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28233424 |
acctttcatcctccctaagccgcttcacagagttcctctccgcgtcggcaacgtcctcgaactcgtcggtccttcgccatccgccaaaactcaaatcctc |
28233325 |
T |
|
| Q |
213 |
attcaaactgcaatcacttgcattcttcccaaagactggaatgggataaactacggtggatttgaacatttggttctatttattgatcttgattccagat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28233324 |
attcaaactgcaatcacttgcattcttcccaaagactggaaggggataaactacggtggatttgaacatttggttctatttattgatcttgattccagat |
28233225 |
T |
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| Q |
313 |
ttgatatccagcggttttctcaaatgcttgttcatcggattatgg |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28233224 |
ttgatatccagcggttttctcaaatgcttgttcatcggattatgg |
28233180 |
T |
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