View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_37 (Length: 355)
Name: NF10070_low_37
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 3969792 - 3969624
Alignment:
| Q |
19 |
tttccaccatctcagtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacaga |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3969792 |
tttccaccatctctgtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctctttacattccctctcttcccatcacaga |
3969693 |
T |
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| Q |
119 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3969692 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
3969624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 24124707 - 24124874
Alignment:
| Q |
19 |
tttccaccatctcagtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacaga |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24124707 |
tttccaccatctctgtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctctttacattccctctcttcccatcacaga |
24124806 |
T |
|
| Q |
119 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24124807 |
taaatacttgatcatattatccatgacta-tgattgatctagaataacttgatccggacaagatactca |
24124874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 36620563 - 36620731
Alignment:
| Q |
19 |
tttccaccatctcagtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacaga |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36620563 |
tttccaccatctctgtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctctttacattccctctcttcccatcacaga |
36620662 |
T |
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| Q |
119 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36620663 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
36620731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 23354471 - 23354639
Alignment:
| Q |
19 |
tttccaccatctcagtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacaga |
118 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23354471 |
tttccaccatctctgtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctctttacattccctctcttcccatcacaga |
23354570 |
T |
|
| Q |
119 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23354571 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
23354639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9805573 - 9805405
Alignment:
| Q |
19 |
tttccaccatctcagtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacaga |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9805573 |
tttccaccatctctgtcatctttccatgctttacccgttcctttcttccttctacaccataaccaaatcctctttacattccctctcttcccatcacaga |
9805474 |
T |
|
| Q |
119 |
taaatacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805473 |
taaagacttgatcatattatccatgactattgattgatctagaataacttgatccggacaagatactca |
9805405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 36121443 - 36121576
Alignment:
| Q |
48 |
tttacccgttcctttcttccttctacaccataaccaaatcctttttacattccctctcttcccatcacagataaatacttgatcatattatccatgacta |
147 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||||| |||| |||||| | | |||||||| |
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| T |
36121443 |
tttacccgttcctttcttccttctactccataaccaaatcctctttacattccctcccttcccat-----ataaagactt-atcataatgtacatgacta |
36121536 |
T |
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| Q |
148 |
ttgattgatctagaataacttgatccggacaagatactca |
187 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |
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| T |
36121537 |
tgaattgatctagaataacttgatccggacaagatactca |
36121576 |
T |
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