View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_4 (Length: 687)
Name: NF10070_low_4
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Complemental strand, 18092824 - 18092153
Alignment:
| Q |
1 |
accagcaataagtgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcatcattcccaatag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092824 |
accagcaataagtgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcatcattcccaatag |
18092725 |
T |
|
| Q |
101 |
aaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacagaacgccttctaataccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092724 |
aaccagtaccttccctcatcttcaacctttccccaacaaaactcctaaatatactcaaaaccttcttaacagaaacaacagaacgccttctaataccttg |
18092625 |
T |
|
| Q |
201 |
caaatcaaaaaccttcaacataggnnnnnnntccgacaaattcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092624 |
caaatcaaaaaccttcaacataggaaaaaaatccgacaaattcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcc |
18092525 |
T |
|
| Q |
301 |
tcagcagaatgcacaaaatctgctgagaaaaaagtattcgacaacaaattaatcgtcgtcatgaaagcaactcttccaatatcgacagcttcctcaattt |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092524 |
tcagcagaatgcacaaaatctgccgagaaaaaagtattcgacaacaaattaatcgtcgtcatgaaagcaactcttccaatatcgacagcttcctcaattt |
18092425 |
T |
|
| Q |
401 |
cgctacacttttttatgtcatctaagaggtcttgtaatttcctccgccttagcgcctggcttgaatcgagagttttgtttgcaaacaactggttattgca |
500 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092424 |
cgctacactttttgatgtcatctaagaggtcttgtaatttcctccgccttagcgcctggcttgaatcgagagttttgtttgcaaacaactggttattgca |
18092325 |
T |
|
| Q |
501 |
aatttttctaaggtcacgccaacgcggggaaacacgcataaatgataaactatattgatcatggttgagaacggagagtgcgtccgggacagtccggttt |
600 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092324 |
aatttttctaaggtcgcgccaacgtggggaaacacgcataaatgacaaactatattgatcatggttgagaacggagagtgcgtccgggacagtccggttt |
18092225 |
T |
|
| Q |
601 |
gatagtaaggtgtcatgtgtttgtagaacttcttttgctatgtctgctgaggatattacaatggttgttact |
672 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18092224 |
gatagtaaggtgtcatgtgtttgtagaacttcttttgctatgtctgctgaggatattactatggttgttact |
18092153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Complemental strand, 18102956 - 18102301
Alignment:
| Q |
13 |
tgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcatcattcccaatagaaccagtacctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| || |||||| |||||||||||||||||||||||| |
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| T |
18102956 |
tgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatgttaagtaaagcatcaagcacatcaccattcccaatagaaccagtacctt |
18102857 |
T |
|
| Q |
113 |
ccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacagaacgccttctaataccttgcaaatcaaaaac |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18102856 |
ccctcatcttcaacctttccccaacaaatctcctaaatatactcaaaaccttcttaacagaaataacagaacgccttctaataccttgcaaatcaaaaat |
18102757 |
T |
|
| Q |
213 |
cttcaacataggnnnnnnntccgacaaattcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcagcagaatgc |
312 |
Q |
| |
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||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18102756 |
cttcagcataggaaaaaaatctgacaaattcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcgacagaatgc |
18102657 |
T |
|
| Q |
313 |
acaaaatctgctgagaaaaaagtattcgacaacaaattaatcgtcgtcatgaaagcaactcttccaatatcgacagcttcctcaatttcgctacactttt |
412 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
18102656 |
acaaaatctgccgagaaaaaagtatttgacaacaaattagtcgtcgtcatgaaagcaactcttccaatatccacagcttcctcaatttcactacactttt |
18102557 |
T |
|
| Q |
413 |
ttatgtcatctaagaggtcttgtaatttcctccgccttagcgcctggcttgaatcgagagttttgtttgcaaacaactggttattgcaaatttttctaag |
512 |
Q |
| |
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| ||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102556 |
tgatgtcgtctaagaggtcttgtaatttcctctgccttagtgtctggctcgaatcgagagttttgtttgcaaacaactggttattgcaaatttttctaag |
18102457 |
T |
|
| Q |
513 |
gtcacgccaacgcggggaaacacgcataaatgataaactatattgatcatggttgagaacggagagtgcgtccgggacagtccggtttgatagtaaggtg |
612 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |
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|
| T |
18102456 |
gtcacgccaacgcggagaaacacgcataaatgacaaactatattgatcatggttgagaacggagagtgcgtctgggacagtccggtttgatagtatgttg |
18102357 |
T |
|
| Q |
613 |
tcatgtgtttgtagaacttcttttgctatgtctgctgaggatattacaatggttgt |
668 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18102356 |
tcatgtgtttgtaggacttcttttgctatgtctgctgaggatattacaatggttgt |
18102301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 670
Target Start/End: Original strand, 31137421 - 31137478
Alignment:
| Q |
613 |
tcatgtgtttgtagaacttcttttgctatgtctgctgaggatattacaatggttgtta |
670 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||| || |||| |||||| |||| |
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|
| T |
31137421 |
tcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagtta |
31137478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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