View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10070_low_40 (Length: 344)

Name: NF10070_low_40
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10070_low_40
NF10070_low_40
[»] chr2 (5 HSPs)
chr2 (1-334)||(5726802-5727144)
chr2 (70-188)||(26618212-26618334)
chr2 (41-109)||(11804919-11804987)
chr2 (40-96)||(34233636-34233692)
chr2 (41-109)||(35204261-35204329)
[»] chr1 (5 HSPs)
chr1 (32-192)||(15470871-15471035)
chr1 (41-197)||(21761101-21761260)
chr1 (136-197)||(26088763-26088824)
chr1 (42-126)||(26088618-26088706)
chr1 (39-109)||(22923599-22923669)
[»] chr7 (4 HSPs)
chr7 (117-189)||(7414749-7414821)
chr7 (46-109)||(48582108-48582171)
chr7 (42-150)||(31266696-31266807)
chr7 (136-192)||(31266820-31266876)
[»] chr8 (2 HSPs)
chr8 (41-193)||(9944463-9944619)
chr8 (62-99)||(30202034-30202071)
[»] chr5 (2 HSPs)
chr5 (109-192)||(15798823-15798905)
chr5 (42-99)||(28717348-28717405)
[»] chr3 (1 HSPs)
chr3 (42-97)||(1639458-1639513)
[»] chr4 (1 HSPs)
chr4 (134-192)||(42420450-42420508)
[»] chr6 (1 HSPs)
chr6 (40-96)||(864325-864381)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 5726802 - 5727144
Alignment:
Q  1 tatcaatttgcccatcagcccaaatgatcttgcaaaaattgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcct 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5726802 tatcaatttgcccatcagcccaaatgatattgcaaaaattgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccgaaaatgcct 5726901  T
Q  101 ctggcgtgaactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttttcattat 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  5726902 ctggcgtgaactcatgcatgtgttaatcttgcgtgagttaacttacgctgcgtgtcattttaaaggtcatacataacctcatttcctcatttttcattat 5727001  T
Q  201 tttctcgataaaaagagtg---------ttttgataatttgtacttcgaataaaaaggttttcatagtttagtgaacgatttgagatttatttttatggg 291  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5727002 tttctcgataaaaagagtgttttgatatttttgataatttgtacttcgaataaaaaggttttcatagtttagtgaacgatttgagatttatttttatggg 5727101  T
Q  292 tagtgagagacaaatattcatgtttagtcatttgtcctttgct 334  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5727102 tagtgagagacaaatattcatgtttagtcatttgtcctttgct 5727144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 26618334 - 26618212
Alignment:
Q  70 ctcactcacaaccaaacttccaaaaatgcctctggcgtga----actcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaag 165  Q
    ||||||| ||||||||||||  |||||||| |||||||||    ||||| ||||||||||| |  |  |||||||||| || || |||||| ||||||||    
T  26618334 ctcactcccaaccaaacttctgaaaatgcccctggcgtgagttaactcacgcatgtgttaaaccagtgtgagttaactcacactacgtgtccttttaaag 26618235  T
Q  166 gtcagacataacctcatttcctc 188  Q
    |||||||||||||||||||||||    
T  26618234 gtcagacataacctcatttcctc 26618212  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 11804919 - 11804987
Alignment:
Q  41 gaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtga 109  Q
    ||||||||||||||| ||| ||||||||||| ||||  |||||||||| | ||||| || || ||||||    
T  11804919 gaaaaatgctcttctcccagcaagttttacttactcctaaccaaactttcgaaaatacccctagcgtga 11804987  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 34233692 - 34233636
Alignment:
Q  40 tgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaat 96  Q
    |||||||| ||||||||||| || ||||| ||||||  ||||||||||||| |||||    
T  34233692 tgaaaaattctcttcttccatcacgttttgctcacttccaaccaaacttcccaaaat 34233636  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 35204261 - 35204329
Alignment:
Q  41 gaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtga 109  Q
    |||||||||| |||| |||||||| ||| |||||||  || |||||||||||||||  ||||| |||||    
T  35204261 gaaaaatgcttttctcccaacaagatttgctcactccaaatcaaacttccaaaaatatctctgacgtga 35204329  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 15470871 - 15471035
Alignment:
Q  32 gcaaaaattgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtga----actcatgcatgtgttaat 127  Q
    |||||||  ||||||||||||||| |||||||||||| || | || ||||||||||| | ||||| || || ||||||    ||||| |||||||||||     
T  15470871 gcaaaaaaagaaaaatgctcttctcccaacaagttttgcttattcccaaccaaactttcgaaaatacccctagcgtgagttaactcacgcatgtgttaaa 15470970  T
Q  128 cttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 192  Q
    |  || |||||||||| ||| ||||| || |||||||| |||||||||| |||||||||||||||    
T  15470971 ccagcgtgagttaactcacgttgcgtatccttttaaagctcagacataagctcatttcctcattt 15471035  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 21761260 - 21761101
Alignment:
Q  41 gaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtg----aactcatgcatgtgttaatcttgcatga 136  Q
    ||||||||||||||||||||||||||||  ||||| ||| ||||||||| ||||||||| |  |||||    |||||| ||||||||||| |  || |||    
T  21761260 gaaaaatgctcttcttccaacaagttttgttcacttacagccaaacttctaaaaatgcccccagcgtgagttaactcacgcatgtgttaaaccagcgtga 21761161  T
Q  137 gttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttttcat 197  Q
    ||||||| ||  |||||||| |||||||| ||| |||  | ||||||||||||||| ||||    
T  21761160 gttaactcacattgcgtgtccttttaaagctca-acagcaactcatttcctcatttctcat 21761101  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 26088763 - 26088824
Alignment:
Q  136 agttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttttcat 197  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  26088763 agttaactcacgctgcgtgtccttttaaaggtcagacataacctcattttctcatttctcat 26088824  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 26088618 - 26088706
Alignment:
Q  42 aaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtg----aactcatgcatgtgttaa 126  Q
    |||||| ||||||| |||||||||||| |||| || ||| ||||||||| ||||||||  ||| |||    ||||||||||||||||||    
T  26088618 aaaaatactcttctcccaacaagttttgctcattcccaatcaaacttccgaaaatgcccatggtgtgagttaactcatgcatgtgttaa 26088706  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 22923669 - 22923599
Alignment:
Q  39 ttgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtga 109  Q
    |||||||||||| |||| ||||||||||||  ||| || ||||||||||| | |||||||| || ||||||    
T  22923669 ttgaaaaatgctattctcccaacaagttttgttcattctcaaccaaactttcgaaaatgccccttgcgtga 22923599  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 7414821 - 7414749
Alignment:
Q  117 catgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctca 189  Q
    |||||||||||  ||| |||||||||| |||||||||||||||||||||| || | | |||||||||||||||    
T  7414821 catgtgttaattctgcgtgagttaactcacgctgcgtgtctttttaaaggccaaatagaacctcatttcctca 7414749  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 48582108 - 48582171
Alignment:
Q  46 atgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtga 109  Q
    ||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| || ||| |||||    
T  48582108 atgctcttcttccaataagatttgctcactcccaaccaaacttccaaaaataccactgacgtga 48582171  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 31266696 - 31266807
Alignment:
Q  42 aaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtg----aactcatgcatgtgttaatcttgcatgag 137  Q
    ||||||||| |||| |||| ||||||||||||| | ||||||||||| | ||||||||  |||||||    |||||| ||||||||||||| ||| |||     
T  31266696 aaaaatgct-ttctcccaataagttttactcacactcaaccaaactttcgaaaatgccattggcgtgagttaactcacgcatgtgttaatcctgcgtgaa 31266794  T
Q  138 ttaacttacgctg 150  Q
    |||| | ||||||    
T  31266795 ttaagtcacgctg 31266807  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 31266820 - 31266876
Alignment:
Q  136 agttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 192  Q
    |||||||| || ||| ||||| ||||||| |||||||| ||| ||||||||||||||    
T  31266820 agttaactcacactgtgtgtccttttaaaagtcagacaaaacttcatttcctcattt 31266876  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 9944463 - 9944619
Alignment:
Q  41 gaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcctctggcgtg----aactcatgcatgtgttaatcttgcatga 136  Q
    |||||| ||||||||  ||||||||||| |||| |  ||||||||||| | |||| ||| ||| ||||    ||||||  |||||||||||| |||  ||    
T  9944463 gaaaaaagctcttctctcaacaagttttgctcatttccaaccaaactttcgaaaaagcccctgacgtgggttaactcacacatgtgttaatcctgcgcga 9944562  T
Q  137 gttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttt 193  Q
    |||| || |||||||||||  |||| |||| ||| || |||||||||| ||||||||    
T  9944563 gttagctcacgctgcgtgttgttttcaaggccaggcagaacctcattttctcatttt 9944619  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 30202071 - 30202034
Alignment:
Q  62 aagttttactcactcacaaccaaacttccaaaaatgcc 99  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  30202071 aagttttgctcactcccaaccaaacttccaaaaatgcc 30202034  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 15798905 - 15798823
Alignment:
Q  109 aactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 192  Q
    |||||||||  |||||||| |||| ||| |||||| ||| |||||||  ||||||||| |||||||||||| ||||||||||||    
T  15798905 aactcatgctagtgttaattttgcgtgacttaactcacgttgcgtgttattttaaagg-cagacataaccttatttcctcattt 15798823  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 28717348 - 28717405
Alignment:
Q  42 aaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatgcc 99  Q
    ||||||| |||||| |||||||||||| ||||||| ||||||||||| ||||| ||||    
T  28717348 aaaaatgatcttctcccaacaagttttgctcactcccaaccaaactttcaaaagtgcc 28717405  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 1639513 - 1639458
Alignment:
Q  42 aaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaatg 97  Q
    ||||||||||||||||||||||||||||||||    |||| |||||||||||||||    
T  1639513 aaaaatgctcttcttccaacaagttttactcagatccaactaaacttccaaaaatg 1639458  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 42420450 - 42420508
Alignment:
Q  134 tgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 192  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||  |||| |||||||    
T  42420450 tgagttaactcacgctgcgtgtcgttttaaaggtcagacagaaccctattttctcattt 42420508  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 864325 - 864381
Alignment:
Q  40 tgaaaaatgctcttcttccaacaagttttactcactcacaaccaaacttccaaaaat 96  Q
    |||||||||||||||| |||||||| |||  |||||| ||| ||||||| |||||||    
T  864325 tgaaaaatgctcttctcccaacaagatttgttcactcccaatcaaactttcaaaaat 864381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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