View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_43 (Length: 329)
Name: NF10070_low_43
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 31444538 - 31444840
Alignment:
| Q |
17 |
agatactacggtagaggaccaattcaactcactcagtaagcttctttcatcttcatgcctctagcatttcaaaccatacccccatctaaatatcaaacca |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31444538 |
agatactacggcagaggaccaattcaactcactcagtaagcttctttcatcttcatgcctctagcatttcaaaccatacccccatctaaatatcaaacca |
31444637 |
T |
|
| Q |
117 |
tgttattttatttttcttaacataatgaattaacattgatttcgagttatagatatgagtgtttagtgaactaatgggatgttgatcctttatcacagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31444638 |
tgttattttatttttcttaacataatgaattaacattgatttctagttatagatatgagtgtttagtgaactaatgggatgttgatcctttatcacagca |
31444737 |
T |
|
| Q |
217 |
actacaattatggtccagccggtagagccattaatcaagatttgataaacaatccggatttagtgtcctcaaacccatctgtgtcattcaggacagccct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31444738 |
actacaattatggtccagccggtagagccattaatcaagatttgataaacaatccggatttagtgtcctcaaacccatctgtgtcattcaggacagccct |
31444837 |
T |
|
| Q |
317 |
atg |
319 |
Q |
| |
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||| |
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| T |
31444838 |
atg |
31444840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 31434537 - 31434645
Alignment:
| Q |
211 |
acagcaactacaattatggtccagccggtagagccattaatcaagatttgataaacaatccggatttagtgtcctcaaacccatctgtgtcattcaggac |
310 |
Q |
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||||| ||||||||||||||| ||| || | |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||| |
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| T |
31434537 |
acagcgactacaattatggtcaagcgggaaaagccatcaatcaagatttgataaacaatccggatttagtgtccacaaacccaactgtatcattcaagac |
31434636 |
T |
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| Q |
311 |
agccctatg |
319 |
Q |
| |
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|||| |||| |
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| T |
31434637 |
agccatatg |
31434645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 31430378 - 31430513
Alignment:
| Q |
178 |
tttagtgaactaatgggatgttgatcctttatcacagcaactacaattatggtccagccggtagagccattaatcaagatttgataaacaatccggattt |
277 |
Q |
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||||||| ||||||| | ||||| |||| ||||||||| |||||||| |||| ||| |||| ||| |||||| ||||||||||||||||||||||| | |
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| T |
31430378 |
tttagtggactaatgcaacgttgacccttgttcacagcaattacaattacggtcaagcgggtaaagctattaatgaagatttgataaacaatccggatct |
31430477 |
T |
|
| Q |
278 |
agtgtcctcaaacccatctgtgtcattcaggacagc |
313 |
Q |
| |
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||| ||| |||||||| |||| ||||||| |||||| |
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| T |
31430478 |
agtctccacaaacccaactgtatcattcaagacagc |
31430513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31429487 - 31429535
Alignment:
| Q |
17 |
agatactacggtagaggaccaattcaactcactcagtaagcttctttca |
65 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||| |||||||| |
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| T |
31429487 |
agatactatggcagaggacctattcaactcactcagtaagtttctttca |
31429535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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