View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_45 (Length: 327)
Name: NF10070_low_45
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 23598709 - 23598864
Alignment:
| Q |
86 |
tcacttgtgagtaggtaacttgtgactatatacaaacacaaacaagacccattgtagagaaggggtcttttctgcagcccatctgtttcacacacttcta |
185 |
Q |
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| T |
23598709 |
tcacttgtgagtaggtaacttgtgactatatacaaacacaaacaaaacccattgtagagaaggggtcttttctgcagcccatctgtttcacactcttcta |
23598808 |
T |
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| Q |
186 |
ttcagtaagctcaannnnnnnncctgccattttgtgcttcttttcccattttccca |
241 |
Q |
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| T |
23598809 |
ttcagtaagctcaattttctttcctgccattttttgcttcttttcccattttccca |
23598864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 24564296 - 24564353
Alignment:
| Q |
17 |
agctactgtaagtatttttgtactcttgactcgttcaaacaattttcaacattagaaat |
75 |
Q |
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| T |
24564296 |
agctactataagtattttagtactct-gactcattcaaacaattttcaacactagaaat |
24564353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 23598581 - 23598620
Alignment:
| Q |
17 |
agctactgtaagtatttttgtactcttgactcgttcaaaca |
57 |
Q |
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| T |
23598581 |
agctactgtaagtatttttgtactc-tgactcgttcaaaca |
23598620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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