View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10070_low_49 (Length: 304)
Name: NF10070_low_49
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 7005536 - 7005816
Alignment:
| Q |
18 |
gaaagacacctttgttagtcgagtggtttgtataaattactcttaatttcagttttgaagcaatgagactttttgatgtgttgttggcagtggagatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005536 |
gaaagacacctttgttagtcgagtggtttgtataaattactcttaatttcagttttgaagcaatgagactttttgatgtgttgttggcagtggagatcaa |
7005635 |
T |
|
| Q |
118 |
gatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattggaggccatggtttgtaaaagaccaagtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005636 |
gatgcagttgttcctttcatctctactcaagcttggataaggaatctaaactactccattgtagatgattggaggccatggtttgtaaaagaccaagtgg |
7005735 |
T |
|
| Q |
218 |
gagggtaagattaaaacgtcttatcaatgttttaaatattggatcgaactggtgagtacaactggttgaaccgaacaccaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005736 |
gagggtaagattaaaacgtcttatcaatgttttaaaaattggattgaactggtgagtacaactggttgaaccgaacaccaa |
7005816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 7015328 - 7015536
Alignment:
| Q |
18 |
gaaagacacctttgttagtcgagtggtttgtataaattactcttaatttcagttttgaagcaatgagactttttgatgtgttgttggcagtggagatcat |
117 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7015328 |
gaaagacgcctttgttagttgagtggtttgtataaattactcttaatttccattttgaagcaatgagactttttgatgtgttgttgccagtggagatcac |
7015427 |
T |
|
| Q |
118 |
gatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattggaggccatggtttgtaaaagaccaagtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
7015428 |
gatgcagttgttcctttcatctctactcaagcatggataaggaatctaaactactccattgtagatgattggaggccatggtttgtaaatggccaagtag |
7015527 |
T |
|
| Q |
218 |
gagggtaag |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
7015528 |
gagggtaag |
7015536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 6996486 - 6996622
Alignment:
| Q |
90 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6996486 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatgtctactcaagcttggataaggaatctaaactactccattgtagatgattgg |
6996585 |
T |
|
| Q |
190 |
aggccatggtttgtaaaagaccaagtgggagggtaag |
226 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |
|
|
| T |
6996586 |
aggccatggtttgtaaacggtcaagtgggagggtaag |
6996622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 266
Target Start/End: Original strand, 7057889 - 7058065
Alignment:
| Q |
90 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
189 |
Q |
| |
|
|||||||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7057889 |
ttgatgtgttttttgcagtggggatcatgatgtagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
7057988 |
T |
|
| Q |
190 |
aggccatggtttgtaaaagaccaagtgggagggtaagattaaaacgtcttatcaatgttttaaatattggatcgaac |
266 |
Q |
| |
|
||| ||||||||||||| | ||||||||||||||||| | || | || ||||||||||||||| ||| ||| |||| |
|
|
| T |
7057989 |
aggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaac |
7058065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 7041872 - 7042032
Alignment:
| Q |
90 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
189 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7041872 |
ttgatgtgttttttgcagtggggatcatgatgcagttgttcctttcatgtctactcaagcttggataagggatctaaactactccattgtagatgactgg |
7041971 |
T |
|
| Q |
190 |
aggccatggtttgtaaaagaccaagtgggagggtaagattaaaacgtcttatcaatgtttt |
250 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| | |||| || |||||||||||| |
|
|
| T |
7041972 |
aggccatggtttgtaaatggccaagtgggagggtaagtatgaaacttcatatcaatgtttt |
7042032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 7022157 - 7022282
Alignment:
| Q |
101 |
ttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattggaggccatggtt |
200 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
7022157 |
ttggcagtggggttcttgatgcaattgttcctttcatgtctactcaagcatggataagggatctaaattactccactgtagatgattggaggccatggtt |
7022256 |
T |
|
| Q |
201 |
tgtaaaagaccaagtgggagggtaag |
226 |
Q |
| |
|
|||||| | |||||||||||||||| |
|
|
| T |
7022257 |
tgtaaatggtcaagtgggagggtaag |
7022282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 7028880 - 7029016
Alignment:
| Q |
90 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
189 |
Q |
| |
|
|||||||||| || ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7028880 |
ttgatgtgttttttgcagtggggatcttgatttagttgttcctttccagtctactcaagcatggataagggatctaaactactccattgtagatgattgg |
7028979 |
T |
|
| Q |
190 |
aggccatggtttgtaaaagaccaagtgggagggtaag |
226 |
Q |
| |
|
||| ||||||||||||| | ||||||| |||||||| |
|
|
| T |
7028980 |
aggtcatggtttgtaaatggtcaagtggcagggtaag |
7029016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 90 - 292
Target Start/End: Original strand, 7048972 - 7049174
Alignment:
| Q |
90 |
ttgatgtgttgttggcagtggagatcatgatgcagttgttcctttcatctctactcaagcatggataagggatctaaactactccattgtagatgattgg |
189 |
Q |
| |
|
|||||||||| || ||||||| |||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7048972 |
ttgatgtgttttttgcagtggggatcttgatttaattgttcctttccggtctactcaagcatggataagggatctaaactactccattatagaggattgg |
7049071 |
T |
|
| Q |
190 |
aggccatggtttgtaaaagaccaagtgggagggtaagattaaaacgtcttatcaatgttttaaatattggatcgaactggtgagtacaactggttgaacc |
289 |
Q |
| |
|
||| |||||| |||||| | |||||||| |||||||| | || | || ||||||||||||||| ||| ||| |||||||| || |||| |||||||| |
|
|
| T |
7049072 |
aggtcatggtatgtaaatggccaagtggcagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactggtcggttcaaccagttgaacc |
7049171 |
T |
|
| Q |
290 |
gaa |
292 |
Q |
| |
|
||| |
|
|
| T |
7049172 |
gaa |
7049174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 6995924 - 6995966
Alignment:
| Q |
40 |
gtggtttgtataaattactcttaatttcagttttgaagcaatg |
82 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
6995924 |
gtggtttgtataaattactcttaattttaatttcgaagcaatg |
6995966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University