View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_6 (Length: 606)
Name: NF10070_low_6
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 13 - 589
Target Start/End: Complemental strand, 44006837 - 44006267
Alignment:
| Q |
13 |
cagaacctgtgtggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006837 |
cagaacctgtgtggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaa |
44006738 |
T |
|
| Q |
113 |
gcgtcaattgaactagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtactttattggcttgtacgacaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006737 |
gcgtcaattgaactagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtactttattggcttgtacgacaat |
44006638 |
T |
|
| Q |
213 |
cttgtattctttaccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctagagcagcattgttttatgctagttgc |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44006637 |
cttgtattctttaccaaacttttggagaggttttattcggagacaaaccaacaatgttg--------ctagctagagcagcattgttttatgctagttgc |
44006546 |
T |
|
| Q |
313 |
caagtttttgactatattcctccataaattaatactactttgatgaatgtcnnnnnnnnnnnncctaaatcggtaatactaataacaaataaatacgcag |
412 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
44006545 |
caagtttttgactatattcctccatatattaatactactttgatgaatgccaaaaaaaaaaaacctaaatcggtaatactaataacaaataaatacgcag |
44006446 |
T |
|
| Q |
413 |
atgacactaaaagatgccgaaaaac--ttttactaatgaagagttatcacacatcaattgattactttttcttgattgataattggctactataaacatg |
510 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006445 |
atgacactaaaagatgccgaaaaacttttttactaatgaagagttatcacacatcaattgattactttttcttgattgataattggctactataaacatg |
44006346 |
T |
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| Q |
511 |
gttattggttaaataattttttccgtaatgacataatcatcatgttactttagacaggacaattgatcactttcataat |
589 |
Q |
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| T |
44006345 |
gttattggttaaataattttttccgtaatgacataatcatcatgttactttagacaggacaattgatcactttcataat |
44006267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 89 - 361
Target Start/End: Original strand, 24152445 - 24152715
Alignment:
| Q |
89 |
cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagag-gggata |
187 |
Q |
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| T |
24152445 |
cttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggga-gaccaagtcatacaacatagtggggta |
24152543 |
T |
|
| Q |
188 |
gtactttattggcttgtacgacaatcttgtattctttaccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctag |
287 |
Q |
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||| ||||| ||||| | ||| | || |||||||||||||||||| ||||| ||||| ||||||| ||||| |||||| ||| ||| ||||||||||| |
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| T |
24152544 |
gtattttatgtgcttgcaaaacatttttatattctttaccaaactttcggataagttttcttcggagacaaacaaacaatattgttcaccttctagctag |
24152643 |
T |
|
| Q |
288 |
agcagcattgttttatgctagttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
361 |
Q |
| |
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||||||| |||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
24152644 |
tc--gcattgtcttatgctagttgccaagtctttgattatattcctccatgtattactactactttgatgaatg |
24152715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 64 - 361
Target Start/End: Original strand, 24146980 - 24147276
Alignment:
| Q |
64 |
gggtttaaagcaagctttaatgtgg-cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaag |
162 |
Q |
| |
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|||| ||||||||||| || |||| ||||||||| || |||||| ||||| || ||||||||||||||||||||| || | || |||||||||||| | |
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| T |
24146980 |
gggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggga-g |
24147078 |
T |
|
| Q |
163 |
acctagtcatagaacagag-gggatagtactttattggcttgtacgacaatcttgtattctttaccaaacttttggataggttttattcggaggcaaacc |
261 |
Q |
| |
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||| ||||||| |||| || ||| ||||| ||||| ||||| | ||| | || ||||||||||||||||| ||||| ||||| ||||||| ||||| |
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| T |
24147079 |
accaagtcatacaacaaagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaacttacggataagttttcttcggagacaaaca |
24147178 |
T |
|
| Q |
262 |
aacaatgttgctcatcttctagctagagcagcattgttttatgctagttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
361 |
Q |
| |
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|||||||||||||| ||||||||||| | || |||| || ||||||||||||||| | ||| ||||| ||||||| |||| |||||||||||| |||| |
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| T |
24147179 |
aacaatgttgctcaccttctagctagtg--gcgttgtcttgtgctagttgccaagtctctgattatatacctccatgtattactactactttgattaatg |
24147276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 43227988 - 43228140
Alignment:
| Q |
209 |
caatcttgtattctttaccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctagagcagcattgttttatgctag |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||| |||| |||||||| |||| |||||| || | ||| |
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| T |
43227988 |
caatcttgtattctataccaaactttcggataaattttacacggagataaaccaataatattgcatatcttctatctagtatgacattgtcttgtactat |
43228087 |
T |
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| Q |
309 |
ttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
361 |
Q |
| |
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|| |||||||||| |||||||||||||| |||| |||||| |||||||||| |
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| T |
43228088 |
ttcttaagtttttgattatattcctccatatattattactaccttgatgaatg |
43228140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 35379060 - 35379011
Alignment:
| Q |
219 |
ttctttaccaaacttttggataggttttattcggaggcaaaccaacaatg |
268 |
Q |
| |
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|||||||||||||||| || ||||||||||||| ||| || ||||||||| |
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| T |
35379060 |
ttctttaccaaactttaggttaggttttattcgaaggtaagccaacaatg |
35379011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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