View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_61 (Length: 254)
Name: NF10070_low_61
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_61 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 51767623 - 51767388
Alignment:
| Q |
19 |
ttgaccattcatttaaagtttcaaattatcacaacatgcgggggcatggggatgatgtggtaatgatttggcaagtgccaagagtcggcatcaaagacct |
118 |
Q |
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| T |
51767623 |
ttgaccattcatttaaagtttcaaattatcacaacatgcgggggcatggggatgatgtggtaatgatttggcaagtgccaagagtcggcatcaaagacct |
51767524 |
T |
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| Q |
119 |
tacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatcgaatagaaccacatatatcggtgtcatgcttgtgtcgaacaacaatatg |
218 |
Q |
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| T |
51767523 |
tacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatcgaatagaaccacatatatcggtgtcatgcttgtgtcgaacaacaatatg |
51767424 |
T |
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| Q |
219 |
tatccaactctaaacatgccttcaatctaaagtgtc |
254 |
Q |
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| T |
51767423 |
tatccaactctaaacatgccttcaatctaaagtgtc |
51767388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 51755810 - 51755680
Alignment:
| Q |
96 |
ccaagagtcggcatcaaagaccttacacaaacaccagatacaatacc--taataatttaacaaaataaaaatgatcgaatagaaccacatata------t |
187 |
Q |
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| T |
51755810 |
ccaagagtcggcatcgaagcacttgcacaaacac----tacaataccggtaataatt-aagaaaataaaaatgattgaatagaaccacatatatatcggt |
51755716 |
T |
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| Q |
188 |
cggtgtcatgcttgtgtcgaacaacaatatgtatcc |
223 |
Q |
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| T |
51755715 |
cggtgtcttgcttgtgttcaacaacagtatgtatcc |
51755680 |
T |
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