View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_63 (Length: 252)
Name: NF10070_low_63
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 36167486 - 36167661
Alignment:
| Q |
60 |
aaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagatattttgagagattcaccacaaaaaagaaagatatttt |
159 |
Q |
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| T |
36167486 |
aaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagatattttgagagattcaccacaaaaaagaaagatatttt |
36167585 |
T |
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| Q |
160 |
gagagattgagtatgatttattaggtgagggaacatggaaacatttcaccatgctaccacgaatatccaaaccctc |
235 |
Q |
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| T |
36167586 |
gagagattgagcatgatttattaggtgggggaacatggaaacatttcaccatgctaccacgaatatccaaaccctc |
36167661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36167444 - 36167486
Alignment:
| Q |
1 |
atttgaaagtctatatgtaactaatttaaatataacacgttta |
43 |
Q |
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| T |
36167444 |
atttgaaagtctatatttaactaatttaaatataacacgttta |
36167486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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