View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10070_low_7 (Length: 604)
Name: NF10070_low_7
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 22 - 592
Target Start/End: Original strand, 16943879 - 16944452
Alignment:
| Q |
22 |
cagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatgcaacactagattcttagccaagccaataact |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16943879 |
cagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagccaagtcaataact |
16943978 |
T |
|
| Q |
122 |
gatttgttgtcaatgaacaatggtcaactagctcctcatctttattatacaaaaatttcagatttactttagccggagtagaagcaggattgcagctcac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16943979 |
gatttgttgtcaatgaacaatggtcaactagctcctcatctttattatacaaaaatttcagatttactttagccggagtagaagcaggaatgcagctcac |
16944078 |
T |
|
| Q |
222 |
catattgaatctctcgataatatcatttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactt |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16944079 |
catattgaatctctcgataatatattttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactt |
16944178 |
T |
|
| Q |
322 |
tcccaaataagtcatgtccaattctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatata |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16944179 |
tcccaaataagtcatgtccaattctttcatcatttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatata |
16944278 |
T |
|
| Q |
422 |
gatagataagcacaggattataacctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttgttc----aattggaaagttga |
517 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
16944279 |
gatagataagcacaagattataacctttgttatttttcaaatacagaccatattcaactttgcattcaacaaattcttgttcaattaattggaaagttga |
16944378 |
T |
|
| Q |
518 |
caatctttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
592 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16944379 |
caatc-ttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
16944452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 22 - 592
Target Start/End: Original strand, 17014544 - 17015117
Alignment:
| Q |
22 |
cagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatgcaacactagattcttagccaagccaataact |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17014544 |
cagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagccaagtcaataact |
17014643 |
T |
|
| Q |
122 |
gatttgttgtcaatgaacaatggtcaactagctcctcatctttattatacaaaaatttcagatttactttagccggagtagaagcaggattgcagctcac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17014644 |
gatttgttgtcaatgaacaatggtcaactagctcctcatctttattatacaaaaatttcagatttactttagccggagtagaagcaggaatgcagctcac |
17014743 |
T |
|
| Q |
222 |
catattgaatctctcgataatatcatttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactt |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014744 |
catattgaatctctcgataatatattttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactt |
17014843 |
T |
|
| Q |
322 |
tcccaaataagtcatgtccaattctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatata |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17014844 |
tcccaaataagtcatgtccaattctttcatcatttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatata |
17014943 |
T |
|
| Q |
422 |
gatagataagcacaggattataacctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttgttc----aattggaaagttga |
517 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17014944 |
gatagataagcacaagattataacctttgttatttttcaaatacagaccatattcaactttgcattcaacaaattcttgttcaattaattggaaagttga |
17015043 |
T |
|
| Q |
518 |
caatctttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
592 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17015044 |
caatc-ttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
17015117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 255 - 566
Target Start/End: Original strand, 15490481 - 15490790
Alignment:
| Q |
255 |
tcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcat |
354 |
Q |
| |
|
||||||| |||||| |||| || ||| | |||| | ||||||| ||| ||||||||||| |||||||||||||| || ||| || |||||| ||||||| |
|
|
| T |
15490481 |
tcttctgatgcatccctaaaccttttaaagtttaattgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcat |
15490580 |
T |
|
| Q |
355 |
ttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgttat |
454 |
Q |
| |
|
||||||| ||||||||| | |||| | || |||| ||| ||||||||| |||||||||||||||||| | ||||||| |||| ||||||||||| |
|
|
| T |
15490581 |
ttgtcttatgaattcttctttctcaat--tatattggttccagttaccacgaaatcatcaacatatagacaaataagcatcagatttctacctttgttat |
15490678 |
T |
|
| Q |
455 |
tcttcaaatacagaccatattcaactttgcattcgacaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttggagcttgctttga |
554 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| ||||||||| | || || | |||||||| |||| ||||| | | ||||||||||||||| | |
|
|
| T |
15490679 |
tcttcacatacaaacaatattcaactttgcatttgacaaattcctattgaactagaaagttgtcaattcaattgtttcacgttcttggagcttgcttaaa |
15490778 |
T |
|
| Q |
555 |
tccatacaaagc |
566 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15490779 |
tccatacaaagc |
15490790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 15489883 - 15489941
Alignment:
| Q |
50 |
ataaagtgaaaccttgtctctatgtgtttccttctaccatgcaacactagattcttagc |
108 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
15489883 |
ataaagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagc |
15489941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 252 - 545
Target Start/End: Complemental strand, 9817045 - 9816753
Alignment:
| Q |
252 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
351 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||| |||||||| ||||||||| || |||||||| |
|
|
| T |
9817045 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttcccaaaccagtcatgtcaaactctttcat |
9816946 |
T |
|
| Q |
352 |
catttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgt |
451 |
Q |
| |
|
|||||||||| ||||||| | || ||| || |||||||||| |||| |||||||||||||| |||| ||||||||| ||| || ||| | |||| |
|
|
| T |
9816945 |
catttgtcttttgaattcatctacctc--agataaattgctttcagttttcactaaatcatcaaaatattgatagataaacaccacataatagcatttgc |
9816848 |
T |
|
| Q |
452 |
tattcttcaaatacagaccatattcaactttgcattcg-acaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttggagc |
545 |
Q |
| |
|
||||||||| ||||| | ||| |||| ||||| ||| | | ||| |||| || || | |||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
9816847 |
tattcttcacatacataacattttcatctttgtatttgaaaaaaatcttcttgaactagaaagttgtcaatccttttgttccaggctcttagagc |
9816753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 252 - 562
Target Start/End: Complemental strand, 1831732 - 1831421
Alignment:
| Q |
252 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
351 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||| ||||||||| |||||| |||| |||| |||||||||||||| |||||| || |||||| |||| |
|
|
| T |
1831732 |
atttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatctcaaattctgtcat |
1831633 |
T |
|
| Q |
352 |
catttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgt |
451 |
Q |
| |
|
|||||||||| ||||| || | | |||| | || ||||||| ||||| |||||| |||| |||||||||| ||||||| | ||| || |||||| | |
|
|
| T |
1831632 |
catttgtcttttgaat--ttttctgtctatgttatgttgcttccagttaacactaagtcattaacatatagacagataagtatcagatcattaccttttt |
1831535 |
T |
|
| Q |
452 |
tattctt--caaatacagaccatattcaactttgcattcgacaaa-ttcttgttcaattggaaagttgacaatctttttgttctaggctcttggagcttg |
548 |
Q |
| |
|
||||||| || | ||| |||||||||| ||||||||| || ||| || ||||| || | |||| ||||| ||| |||||||| | |||||||||||||| |
|
|
| T |
1831534 |
tattctttacacacacacaccatattcagctttgcatttgataaattttttgttgaactagaaacttgaccatccttttgttccatgctcttggagcttg |
1831435 |
T |
|
| Q |
549 |
ctttgatccataca |
562 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
1831434 |
cttcaatccataca |
1831421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 1833999 - 1833922
Alignment:
| Q |
34 |
gttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatgcaacactagattcttagccaa |
111 |
Q |
| |
|
|||||| || ||||| ||||||||||| |||| ||| |||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
1833999 |
gttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacactggattcttagccaa |
1833922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 23427973 - 23428035
Alignment:
| Q |
35 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatgcaacact |
97 |
Q |
| |
|
||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
23427973 |
ttcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgacatgcaacact |
23428035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 344 - 551
Target Start/End: Original strand, 11753468 - 11753673
Alignment:
| Q |
344 |
tctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattata |
443 |
Q |
| |
|
||||||||||| |||||| |||||| || |||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||||||| || || |
|
|
| T |
11753468 |
tctttcatcatctgtcttttgaattattctatctc--aggtaaattgcttctagtgaccactagataatcaacatatagacagataagcaccatatcatt |
11753565 |
T |
|
| Q |
444 |
ac-ctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttgg |
542 |
Q |
| |
|
|| ||| || ||||| | ||| ||||||||||| ||||||| || |||||||||||||| | ||||||| ||||| |||| ||| |||||||| | |
|
|
| T |
11753566 |
acattttttttttcttttcagacacaccatattcaaacttgcatttgaaaaattcttgttcaactataaagttgtcaatcatttttttc-aggctctttg |
11753664 |
T |
|
| Q |
543 |
agcttgctt |
551 |
Q |
| |
|
| ||||||| |
|
|
| T |
11753665 |
aacttgctt |
11753673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 28067077 - 28067018
Alignment:
| Q |
84 |
taccatgcaacactagattcttagccaagccaataactgatttgttgtcaatgaacaatg |
143 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
28067077 |
taccatgcaacactggattcttggccaaatcaatagttgatttgttgccaatgaacaatg |
28067018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 15565897 - 15565937
Alignment:
| Q |
284 |
gtttcagtgaattctattccaaggaagtatggtaactttcc |
324 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
15565897 |
gtttcagtgaattccataccaaggaagtatgttaactttcc |
15565937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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