View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_73 (Length: 240)
Name: NF10070_low_73
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_73 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 2559 - 2349
Alignment:
| Q |
30 |
gggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
129 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559 |
gggatcatcacttcgacctttatcccctttaaaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
2460 |
T |
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| Q |
130 |
actcaatacaagatttgtgaagaaaatcatgtagaagtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgtgattgtgatgtggttg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
2459 |
actcaatacaagatttgtgaagaaaatcatgtagaagtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttg |
2360 |
T |
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| Q |
230 |
gttttagttcc |
240 |
Q |
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|||| |||||| |
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| T |
2359 |
gtttcagttcc |
2349 |
T |
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Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 4651542 - 4651332
Alignment:
| Q |
30 |
gggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
129 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4651542 |
gggatcatcacttcgacctttatcccctttaaaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
4651443 |
T |
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| Q |
130 |
actcaatacaagatttgtgaagaaaatcatgtagaagtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgtgattgtgatgtggttg |
229 |
Q |
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| T |
4651442 |
actcaatacaagatttgtgaagaaaatcatgtagaagtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttg |
4651343 |
T |
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| Q |
230 |
gttttagttcc |
240 |
Q |
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|||| |||||| |
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| T |
4651342 |
gtttcagttcc |
4651332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 19083168 - 19082942
Alignment:
| Q |
18 |
ggatccatataggggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
117 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19083168 |
ggatacatacaggggatcatcacttcgatctttatcccctttagaggagcaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
19083069 |
T |
|
| Q |
118 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaa------gtgaaatattacaatgagcaacattcacaaaagcataaagtcttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19083068 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttat |
19082969 |
T |
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| Q |
212 |
gtgattgtgatgtggttggttttagtt |
238 |
Q |
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| T |
19082968 |
gtgatggtgatgttgttagttgtagtt |
19082942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6531811 - 6531883
Alignment:
| Q |
166 |
gtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgtgattgtgatgtggttggttttagtt |
238 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |
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| T |
6531811 |
gtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggattgtgatgttgttggttgtagtt |
6531883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 40109463 - 40109255
Alignment:
| Q |
30 |
gggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40109463 |
gggatcatcacttcgatctttatcccctttagaggagcaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggagtttgagagggca |
40109364 |
T |
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| Q |
130 |
actcaatacaagatttgtgaagaaaatcatgtagaa------gtgaaatattacaatgagcaacattcacaaaagcataaagtcttatgtgattgtgatg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40109363 |
actcaatacaagatttgtgaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatg |
40109264 |
T |
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| Q |
224 |
tggttggtt |
232 |
Q |
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||||||||| |
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| T |
40109263 |
tggttggtt |
40109255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 16148952 - 16148726
Alignment:
| Q |
18 |
ggatccatataggggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
117 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16148952 |
ggatacatacaggggatcatcacttcgatctttatccccgttagaggagcaagtttacaatattttctcaaaatatgctttcaagaagtttcaggaggag |
16148853 |
T |
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| Q |
118 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaa------gtgaaatattacaatgagcaacattcacaaaagcataaagtcttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16148852 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttat |
16148753 |
T |
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| Q |
212 |
gtgattgtgatgtggttggttttagtt |
238 |
Q |
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| ||| ||||||||||||||| ||||| |
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| T |
16148752 |
gggatggtgatgtggttggttgtagtt |
16148726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 23303109 - 23303321
Alignment:
| Q |
18 |
ggatccatataggggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23303109 |
ggatacatacaggggatcatcacttcgatctttatcccctttagaggagcaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
23303208 |
T |
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| Q |
118 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaa------gtgaaatattacaatgagcaacattcacaaaagcataaagtcttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
23303209 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtctaat |
23303308 |
T |
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| Q |
212 |
gtgattgtgatgt |
224 |
Q |
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| ||| ||||||| |
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| T |
23303309 |
gagatggtgatgt |
23303321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 36758329 - 36758106
Alignment:
| Q |
18 |
ggatccatataggggatcatcacttcgatctttatcccctttagaggagaaagtttacaatattttcacaaaatatgctttcaagaagtttcaggaggag |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36758329 |
ggatacatacaggggatcatcacttcgatctttattccctttagaggagcaagtttacaatattttcacaaaatatgctttcaagaagtttca---ggag |
36758233 |
T |
|
| Q |
118 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaa------gtgaaatattacaatgagcaacattcacaaaagcataaagtcttat |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
36758232 |
tttgagagggcaactcaatacaagatttgtgaagaaaatcatgtagaatttactgtgaaatattgcaaggagcaacattcacaaaagcataaagtcttat |
36758133 |
T |
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| Q |
212 |
gtgattgtgatgtggttggttttagtt |
238 |
Q |
| |
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| ||| ||||||||||||||| ||||| |
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| T |
36758132 |
gggatggtgatgtggttggttgtagtt |
36758106 |
T |
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