View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10070_low_80 (Length: 227)

Name: NF10070_low_80
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10070_low_80
NF10070_low_80
[»] chr8 (3 HSPs)
chr8 (1-227)||(31444880-31445106)
chr8 (1-227)||(31430559-31430785)
chr8 (1-227)||(31434685-31434911)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31445106 - 31444880
Alignment:
Q  1 cttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccgattcggtcttcgac 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  31445106 cttaagcaaatggcctttgattgtagcaatccaagttatcaccggtagtcgttctcaacaattgacaatatcttttataaaacccgatccggtcttcgac 31445007  T
Q  101 ccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacctgtcagcatcagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  31445006 ccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctccttgctgacctgtcagcatcagat 31444907  T
Q  201 ggcgtccatcttccagtaatcacatca 227  Q
    |||||||||||||||||||||||||||    
T  31444906 ggcgtccatcttccagtaatcacatca 31444880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31430785 - 31430559
Alignment:
Q  1 cttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccgattcggtcttcgac 100  Q
    |||| |||||||| ||||| ||||  |||||||||||||| ||||   ||  |||||| | ||||||||| ||| || |||| ||||  || || |||||    
T  31430785 cttaggcaaatggcctttggttgttacaatccaagttattgccggggttcactcccaatatttgacaataccttctataaaatccgacccgatcctcgac 31430686  T
Q  101 ccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacctgtcagcatcagat 200  Q
       ||||||||||||| | || ||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| ||||||||| |||||    
T  31430685 tttaggatcctgaccgtgcccgcattcgagcccgccgttgattatgttggtgatcacgccgtatccggggacccgccctgctgagctgtcagcagcagat 31430586  T
Q  201 ggcgtccatcttccagtaatcacatca 227  Q
    |||||||||||||| ||||||||||||    
T  31430585 ggcgtccatcttccggtaatcacatca 31430559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31434911 - 31434685
Alignment:
Q  1 cttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccgattcggtcttcgac 100  Q
    |||||||||||| |||||| |||| |||||||||||||| ||| | | ||  |||||| | ||||||||| ||| || |||||||||| || || |  ||    
T  31434911 cttaagcaaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttctataaaacccgatccgatcattaac 31434812  T
Q  101 ccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacctgtcagcatcagat 200  Q
     |||| |||||| ||  | || ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||  || ||||||||||| ||| | |||    
T  31434811 tcgagcatcctgtccatgcccgcattcgagcccaccgttgattatgttggtgatcacgccgtatccggggacccgtccggctgacctgtctgcacccgat 31434712  T
Q  201 ggcgtccatcttccagtaatcacatca 227  Q
    ||||||||||||||| |||||||||||    
T  31434711 ggcgtccatcttccaataatcacatca 31434685  T

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