View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10070_low_9 (Length: 594)
Name: NF10070_low_9
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 277 - 582
Target Start/End: Original strand, 12617235 - 12617540
Alignment:
| Q |
277 |
tttcttagagtggcaaaactccaagccttcctctaccacttctgctaaggaaaaatcttccacttgaaaatgatctcttcattgcaattggacttagaac |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12617235 |
tttcttagagtggcaaaactccaagccttcctctaccacttctgctaaggaaaaatcttccacttgaaaatgatctcttcattgcaattggacttagcac |
12617334 |
T |
|
| Q |
377 |
acaatgcaaaacctttcttctataactacacttactactttcactttcaccacttaacctctttgatgaaccttcaccttgagaacaatcttgttcttga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617335 |
acaatgcaaaacctttcttctataactacacttgctactttcactttcacctcttaacctctttgatgaaccttcaccttgagaacaatcttgttcttga |
12617434 |
T |
|
| Q |
477 |
ttcatatgcataacattaacatcatcaacattcaaaacaccactttgaaatgaatgatccatagaaaacgatcttcgaattgattcatgataatcttcat |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617435 |
ttcatatgcataacattaacatcatcaacattcaaaacaccactttgaaatgaatgatccatagaaaacgatcttcgaattgattcatgataatcttcat |
12617534 |
T |
|
| Q |
577 |
tatgat |
582 |
Q |
| |
|
|||||| |
|
|
| T |
12617535 |
tatgat |
12617540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 12617059 - 12617181
Alignment:
| Q |
60 |
gttctagcttaggaacaaggcgttaagnnnnnnnncatttcattacacattacacactttgttggattggctttgatattaatatcaatatgcataattt |
159 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
12617059 |
gttctagcttaggaacaaggcgttaaaaaaaaaaacatttcattacacattacacactttgttggattggctttgatattaatatcaatatgtataatat |
12617158 |
T |
|
| Q |
160 |
agagattcaatcatgttaaatat |
182 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12617159 |
agagattcaatcatgttaaatat |
12617181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 27771122 - 27771179
Alignment:
| Q |
328 |
aaaatcttccacttgaaaatgatctcttcattgcaattggacttagaacacaatgcaa |
385 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
27771122 |
aaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaa |
27771179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University