View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_high_10 (Length: 265)
Name: NF10071_high_10
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 30552114 - 30551880
Alignment:
| Q |
12 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattatcacaacatgtttttgttatactaaactatt |
111 |
Q |
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| T |
30552114 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattat-------------------acaaaactatt |
30552034 |
T |
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| Q |
112 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
211 |
Q |
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| T |
30552033 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
30551934 |
T |
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| Q |
212 |
aagtttttcccttctatcctttttatcttcatcaagaacaatcacaacagaagc |
265 |
Q |
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| T |
30551933 |
aagtttttccattctatcctttttatcttcatcaagaacaatcacaacagaagc |
30551880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 30560686 - 30560548
Alignment:
| Q |
127 |
taaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcccttct |
226 |
Q |
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|||||||||| |||||||||||||||||||| || || ||||||| | |||||||||| | | |||||||| ||||||||| ||||||| |||| |||| |
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| T |
30560686 |
taaaagaaaagcataccttgtaaaacaataatttcagtcgttccacttcatcgatttgtcttaaaagattatatgcttgaaaaccaagttcttccattct |
30560587 |
T |
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| Q |
227 |
atcctttttatcttcatcaagaacaatcacaacagaagc |
265 |
Q |
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| T |
30560586 |
gttctttttatcttcatcaacaacaatcacaacagaagc |
30560548 |
T |
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