View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_high_11 (Length: 259)
Name: NF10071_high_11
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1422930 - 1422691
Alignment:
| Q |
1 |
agaagaggaacatgaacttgagcatgaagagaaagaaaacaataatgagaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgta |
100 |
Q |
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| T |
1422930 |
agaagaggaacatgaacttgagcatgaagagaaagaaaacaataatgagaatcagacagaagaagttgatcattcggaggttgaaagcgaagtttctgta |
1422831 |
T |
|
| Q |
101 |
attgaaaaggaagaaaatgaaagtgagaatcagatagaagaagttgatcgttccgaggttgaaagcgaagtttctgtgattgaaaaggaagaaaaacaaa |
200 |
Q |
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| T |
1422830 |
attgaaaaggaagaaaatgaaagtgagaatcagatagaagaagttgatcgttccgaggttgaaagtgaagtttctgtgattgaaaaggaagaaaatcaaa |
1422731 |
T |
|
| Q |
201 |
gtgagaatcagacagaagatgttgattgttccaaggttga |
240 |
Q |
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| T |
1422730 |
gtgagaatcagacagaagatgttgatcgttccaaggttga |
1422691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 1422807 - 1422627
Alignment:
| Q |
46 |
tgagaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgtaattgaaaaggaagaaaatgaaagtgagaatcagatagaagaagtt |
145 |
Q |
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| T |
1422807 |
tgagaatcagatagaagaagttgatcgttccgaggttgaaagtgaagtttctgtgattgaaaaggaagaaaatcaaagtgagaatcagacagaagatgtt |
1422708 |
T |
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| Q |
146 |
gatcgttccgaggttgaaagcgaagtttctgtgattgaaaaggaagaaaaacaaagtgagaatcagacagaagatgttgat |
226 |
Q |
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| T |
1422707 |
gatcgttccaaggttgaaatcgaagtttctggtaatgaaaaggtagaaattgaaagtgggaatcagagagaagaagttgat |
1422627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 1422729 - 1422580
Alignment:
| Q |
46 |
tgagaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgtaattgaaaaggaagaaaatgaaagtgagaatcagatagaagaagtt |
145 |
Q |
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||||||||||||| |||| ||||||| ||| ||||||||| ||||||||||| | |||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
1422729 |
tgagaatcagacagaagatgttgatcgttccaaggttgaaatcgaagtttctggtaatgaaaaggtagaaattgaaagtgggaatcagagagaagaagtt |
1422630 |
T |
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| Q |
146 |
gatcgttccgaggttgaaagcgaagtttctgtgattgaaaaggaagaaaa |
195 |
Q |
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|||| || |||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1422629 |
gatcattttgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaa |
1422580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 1422648 - 1422572
Alignment:
| Q |
49 |
gaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgtaattgaaaaggaagaaaatgaaagtg |
125 |
Q |
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|||||||| | ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
1422648 |
gaatcagagagaagaagttgatcattttgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatgaaagtg |
1422572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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