View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10071_high_13 (Length: 248)
Name: NF10071_high_13
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 36594502 - 36594285
Alignment:
| Q |
19 |
gaaaacgtttcaaaatgagttagcgtaggacttctagatagtcgaattttgtaaatactagctgtaaatattatttttaatatacacgatcgatcaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
36594502 |
gaaaacgtttcaaaatgagttagcgtaggacttctaaatagtcgaattttgtaaatactagctgtaaatattatttttaatatacgcgatcgatcaaaca |
36594403 |
T |
|
| Q |
119 |
agtcttttacacttgatgtattgttttcctaatttctaaggagaagaatctaattctaatttcttctaattcaaaagtcaggtttgaatttttcttatat |
218 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36594402 |
aatcttt-acacttgatgtattgttttcctaatttctaaggagaagaatctaattctaatttcttctaattcaaaagtgaggtttgaatttttcttatat |
36594304 |
T |
|
| Q |
219 |
gaattggagtccctcctat |
237 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
36594303 |
gaatcggagtccctcctat |
36594285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University