View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_high_4 (Length: 409)
Name: NF10071_high_4
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 42254953 - 42254574
Alignment:
| Q |
16 |
tctatttctttttccaattgattaaatatgcattcttagtatttttattaaactacgctttcctctattttctgtagcttactattcttgggtttggttc |
115 |
Q |
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| T |
42254953 |
tctatttctttttccaattgattaaatatgcattcttagtatttttattaaactacgctttcctctattttctgtagcttactattcttgggtttggtcc |
42254854 |
T |
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| Q |
116 |
tatacggacacaagtggaaacggattgcgagagagcttgtcattactcggtcggcatcacaatgccgatctcgctttggcacccaagcatttgcagggtt |
215 |
Q |
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| T |
42254853 |
tatacggacacaagtggaaacggattgcgagagagcttgtcattactcggtcggcatcacaatgccgatctcgctttggcacccaagcatttgcagggtt |
42254754 |
T |
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| Q |
216 |
taatttttagaagacaaaattgctgagcatgcagtattattccaagatgagttgatttcataaagactattccaagatgagttgattttgtagaatttca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42254753 |
taatttttagaagacaaaattgctgagcatgcagtattattccaagatgagttgatttcataaagactattccaagatgagttgattttgtagaatttca |
42254654 |
T |
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| Q |
316 |
gtgattaaaacaaagaaatgtcgctttagtgnnnnnnnnnnnnnnnctcttgatgttgctgttcctgatctagacgaacctttg |
399 |
Q |
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| T |
42254653 |
gtgattaaaacaaagaaatgtcgctttagtg----tatatatatatctcttgatgttgctgttcctgatctagacgaacctttg |
42254574 |
T |
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