View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_high_5 (Length: 391)
Name: NF10071_high_5
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 43110594 - 43110240
Alignment:
| Q |
18 |
attcctatacaccctagaataatcccttccattaaagcagcctatactttagggtatattgtatacaccattttgtccctctaccnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
43110594 |
attcctatacaccctagaataatcccttccattaaagcagcctatactttagggtat---gtatacaccattttgtccctctaccttttttcatttattt |
43110498 |
T |
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| Q |
118 |
nnnnnnnatagtatttagaagaaaaactagaggagagataatttatattgttgcattttataatctttttattttcaggtgtgatttgaggattgtaagt |
217 |
Q |
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| T |
43110497 |
ttgttttatagtatttacaagaaaaactagaggagagataaattatattgttgcattttataatctttttattttcaggtgtgatttgaggattgtaagt |
43110398 |
T |
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| Q |
218 |
gatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaaggaa |
317 |
Q |
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| T |
43110397 |
gatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaatccaggttatgttgatgaaggaa |
43110298 |
T |
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| Q |
318 |
ggttgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtg |
375 |
Q |
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| T |
43110297 |
ggttgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtg |
43110240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 191 - 376
Target Start/End: Complemental strand, 26314888 - 26314700
Alignment:
| Q |
191 |
ttcaggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaaca |
290 |
Q |
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| T |
26314888 |
ttcaggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaaca |
26314789 |
T |
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| Q |
291 |
ctaatccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgc |
376 |
Q |
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| T |
26314788 |
ctaatccaggttatgttgatgaagaaggaagattgagaattttgcctttctatgatctcaacaagcctcctcacacatgtaatttgtgc |
26314700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 352
Target Start/End: Complemental strand, 5272513 - 5272353
Alignment:
| Q |
195 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
294 |
Q |
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| T |
5272513 |
ggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaa |
5272414 |
T |
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| Q |
295 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
352 |
Q |
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| T |
5272413 |
tcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5272353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 5250048 - 5250208
Alignment:
| Q |
195 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
294 |
Q |
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| T |
5250048 |
ggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaacactaa |
5250147 |
T |
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| Q |
295 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
352 |
Q |
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| T |
5250148 |
tcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataag |
5250208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 5269268 - 5269380
Alignment:
| Q |
195 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
294 |
Q |
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| T |
5269268 |
ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaa |
5269367 |
T |
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| Q |
295 |
tccaggttatgtt |
307 |
Q |
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| T |
5269368 |
tcctggttatgtt |
5269380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 352
Target Start/End: Complemental strand, 5276492 - 5276332
Alignment:
| Q |
195 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
294 |
Q |
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||||||||||||||||||| |||||||| || | ||||| |||||| || ||| |||||||||| || || || | || ||| | |||||||||||||| |
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| T |
5276492 |
ggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
5276393 |
T |
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| Q |
295 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
352 |
Q |
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| T |
5276392 |
tcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5276332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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