View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10071_high_9 (Length: 278)

Name: NF10071_high_9
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10071_high_9
NF10071_high_9
[»] chr5 (4 HSPs)
chr5 (140-268)||(7895625-7895753)
chr5 (103-141)||(7895772-7895810)
chr5 (182-266)||(7976084-7976167)
chr5 (18-83)||(7975933-7975998)
[»] chr3 (3 HSPs)
chr3 (217-268)||(2995793-2995844)
chr3 (18-83)||(45869873-45869938)
chr3 (18-83)||(2995467-2995532)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 7895753 - 7895625
Alignment:
Q  140 atagcctcaaaacaaggtaattacttgtacatcaatatcaattacctgaagagtccttggagagactgtcaatgagttttatattaggaaactctagcaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7895753 atagcctcaaaacaaggtaattacttgtacatcaatatcaattacctgaagagtccttggagagactgtcaatgagttttatattaggaaactctagcaa 7895654  T
Q  240 ccagttgaatagaaacaaaggaggctcct 268  Q
    |||||||||||||||||||||||||||||    
T  7895653 ccagttgaatagaaacaaaggaggctcct 7895625  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 7895810 - 7895772
Alignment:
Q  103 ttaatttttgacaaatttcagaaataaataaaaaggcat 141  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7895810 ttaatttttgacaaatttcagaaataaataaaaaggcat 7895772  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 7976084 - 7976167
Alignment:
Q  182 tacctgaagagtccttggagagactgtcaatgagttttatattaggaaactctagcaaccagttgaatagaaacaaaggaggctc 266  Q
    ||||||||||||  ||| || ||| |||||||| |||||||| ||||| |||| ||| |||||| ||||||||||||||||||||    
T  7976084 tacctgaagagtagttgaagtgaccgtcaatga-ttttatatcaggaagctcttgcagccagtttaatagaaacaaaggaggctc 7976167  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7975933 - 7975998
Alignment:
Q  18 tcaagttacccaatgaagggaaattaatcttggacagattaggaattaagtcgagaacctaagcaa 83  Q
    |||||||||||||||||||||  | | ||||  |||||| ||||||||||| ||||||||||||||    
T  7975933 tcaagttacccaatgaagggaggtcagtcttcaacagatcaggaattaagtagagaacctaagcaa 7975998  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 2995793 - 2995844
Alignment:
Q  217 tttatattaggaaactctagcaaccagttgaatagaaacaaaggaggctcct 268  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  2995793 tttatattaggaaactctagcagccagttgaatagaaacaaaggaggatcct 2995844  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 45869873 - 45869938
Alignment:
Q  18 tcaagttacccaatgaagggaaattaatcttggacagattaggaattaagtcgagaacctaagcaa 83  Q
    ||||||||||||| ||||||| |||||||||| |||||| |||||| |||  |||| |||||||||    
T  45869873 tcaagttacccaaggaagggagattaatcttgaacagatcaggaatgaaggagagagcctaagcaa 45869938  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 2995467 - 2995532
Alignment:
Q  18 tcaagttacccaatgaagggaaattaatcttggacagattaggaattaagtcgagaacctaagcaa 83  Q
    ||||||||||||||||||| | || ||||||  ||| || ||||| ||||| ||||||||||||||    
T  2995467 tcaagttacccaatgaaggaagatcaatcttcaacaaatcaggaactaagtagagaacctaagcaa 2995532  T

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