View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_low_10 (Length: 339)
Name: NF10071_low_10
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_low_10 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 24564689 - 24565008
Alignment:
| Q |
1 |
gatccaataccttgacctcttcaagaatggtgagtctgctaccacggactaataaaacaaataagaacagaaaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564689 |
gatccaataccttgacctcttcaagaatggtgagtctgctaccacggactaataaaacaaataagaacagaaaaaagatgtaacccagacaaaaatattt |
24564788 |
T |
|
| Q |
101 |
acatgttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564789 |
acatgttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccat |
24564888 |
T |
|
| Q |
201 |
ctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactgg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564889 |
ctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactga |
24564988 |
T |
|
| Q |
301 |
ttgatgaaaaatgtggcctt |
320 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24564989 |
ttgatgaaaaatgtggcctt |
24565008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 45533349 - 45533071
Alignment:
| Q |
19 |
cttcaagaatggtgagtctgctaccacggactaataaaacaaataagaacagaaaaaagatgtaacccagacaaaaatatttacatgttgagagaagagc |
118 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
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| T |
45533349 |
cttcaagaatggtgagtttgctgccatggactaataaaacaaataagaacagaaaaaagatgtgacttagacaaaaatatttacatactgagagaagagc |
45533250 |
T |
|
| Q |
119 |
a--ctatatacctttcctgaaatggagaagaaagaacatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaact |
216 |
Q |
| |
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| ||||||||||| | ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||| ||||| ||||||| |
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|
| T |
45533249 |
agtatatataccttttcagaaatagagaagaaagaacatcaaagttttctcgtctatacgttagcatagcataatcaccgccatcttccagttagaaact |
45533150 |
T |
|
| Q |
217 |
tggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaa |
296 |
Q |
| |
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||| |||| || |||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||||| ||||||||| |
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| T |
45533149 |
tgg-cccctaccgcaccgactactttgtgacttcttcactaccaccgacaccgaaatgtcaccatttctccatcgaaaaa |
45533071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 320
Target Start/End: Original strand, 44338865 - 44339129
Alignment:
| Q |
51 |
aataaaacaaataagaacagaaaaaagatgtaacccagacaaaaatatttacatgttgagagaagagcactatatacctttcctgaaatggagaagaaag |
150 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||| | |||||||||||||| |||| ||||||||| |||||||||||| |||||| |||||||||| |
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| T |
44338865 |
aataaaacaaataagaacataaacaa-atgtaacccaaataaaaatatttacatattgaaagaagagcagtatatacctttcttgaaatagagaagaaag |
44338963 |
T |
|
| Q |
151 |
aacatgaa---agttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgac |
247 |
Q |
| |
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|||| || ||||||||| || ||||||||||||||||||||||| |||||||| || | |||||| | ||||||||||| |||||||| |||||| |
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| T |
44338964 |
aacagtaaattagttttctcatctctacgttagcatagcacgtccaccgccatctcctggttaaaaactt-gtcccccactgcatcgactactttgtgac |
44339062 |
T |
|
| Q |
248 |
ttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggcctt |
320 |
Q |
| |
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||| | || || |||||||||||||| | ||||||||| | ||| | | ||||||||||||||||||| |
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|
| T |
44339063 |
ttctt------caaagccaccgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggcctt |
44339129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 320
Target Start/End: Complemental strand, 44336113 - 44335845
Alignment:
| Q |
48 |
actaataaaacaaataagaacagaaaaaagatgtaacccagacaaaaatatttacatgttgagagaagagcactatatacctttcctgaaatggagaaga |
147 |
Q |
| |
|
||||||||||||||||| |||| ||| || |||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||| |
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|
| T |
44336113 |
actaataaaacaaataaaaacataaacaaaatgtaacccaaacaaaaatatttacatattgaaagaagagcagaatatacctttcctgaaatagagaaga |
44336014 |
T |
|
| Q |
148 |
aagaacatgaa---agttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgt |
244 |
Q |
| |
|
||||| | || ||||||||| || |||||||||||||||||||||||| ||||||| || | |||||| | |||||| |||||||||||| ||| |
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| T |
44336013 |
aagaatagtaaattagttttctcatctctacgttagcatagcacgtccaccatcatctcctggttaaaaactt-gtcccccatcgcaccgactactttgt |
44335915 |
T |
|
| Q |
245 |
gacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggcctt |
320 |
Q |
| |
|
|||||| | || || ||||||||||||| | ||||||||| | ||| | | ||||||||||||||||||| |
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|
| T |
44335914 |
gacttctt------caaagttaccgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggcctt |
44335845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 40389688 - 40389524
Alignment:
| Q |
3 |
tccaataccttgacctcttcaagaatggtgagtctgctaccacggac-taataaaacaaataagaacaga-aaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||||| |||| ||||| || ||||||| ||| ||||| ||||||||| |||||||| | || |
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| T |
40389688 |
tccaatatcttgacctcatcaagaatggtgtgtctgctaccatggacataatagc-catataagaatagataaaaaaatgtaacccggacaaaaagactt |
40389590 |
T |
|
| Q |
101 |
acatgtt---gagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
166 |
Q |
| |
|
| || || |||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
40389589 |
atatcttattgagagaagagcagtatctaccttttctgaa---gagaagaaagaacatgaaagttttct |
40389524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 29633757 - 29633594
Alignment:
| Q |
3 |
tccaataccttgacctcttcaagaatggtgagtctgctaccacggac-taataaaacaaataagaacaga-aaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||| | ||||||||||| ||| ||||| |||||||||| ||| ||||| ||||||||| ||||||| | || |
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|
| T |
29633757 |
tccaatatcttgacctcatcaagaatgg-gtgtctgctaccatagacgtaatagc-caaataagaatagataaaaaaatgtaacccgaacaaaaagactt |
29633660 |
T |
|
| Q |
101 |
acatgtt---gagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
166 |
Q |
| |
|
|||| || ||||||||| || ||| | ||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
29633659 |
acatcttattgagagaagaacaatatctgccttttctgaa---gagaagaaagaacatgaaagttttct |
29633594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 23095887 - 23096051
Alignment:
| Q |
4 |
ccaatacct-tgacctcttcaagaatggtgagtctgctaccacggac-taataaaacaaataagaaca-gaaaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
||||||||| |||| || |||||||||| | |||||||||||| ||| |||||||||||||| |||| | |||| ||||||| ||||||||| |||| |
|
|
| T |
23095887 |
ccaatacctatgacatcatcaagaatggcgtgtctgctaccaccgacataataaaacaaatataaacatgttaaaaattgtaacctagacaaaaagattt |
23095986 |
T |
|
| Q |
101 |
acatgttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttc |
165 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
23095987 |
acatattgagagaatagaagtatatacctttcctgaaagagagaagaaagaacatggaagatttc |
23096051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 83448 - 83284
Alignment:
| Q |
3 |
tccaataccttgacctcttcaagaatggtgagtctgctaccacggac-taataaaacaaataagaacaga-aaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
||||||| ||||||||| ||| |||||||| ||||||||||| |||| |||| | |||||||||| ||| ||||| ||||||||| ||||||||| || |
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|
| T |
83448 |
tccaatatcttgacctcatcatgaatggtgtgtctgctaccatggacataat-agccaaataagaatagagaaaaaaatgtaacccgaacaaaaatactt |
83350 |
T |
|
| Q |
101 |
aca---tgttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
166 |
Q |
| |
|
||| | ||||||||||| || ||| ||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
83349 |
acatcttattgagagaagaacaatatctaccttttctgaa---gagaagaaagaacataaaagttttct |
83284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 48279844 - 48279680
Alignment:
| Q |
3 |
tccaataccttgacctcttcaagaatggtgagtctgctaccacggac-taataaaacaaataagaacaga-aaaaagatgtaacccagacaaaaatattt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||| |||| ||||| |||||||||| ||| ||||| || |||||| ||||||| | | |
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|
| T |
48279844 |
tccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagc-caaataagaatagataaaaaaatataacccgaacaaaaagacct |
48279746 |
T |
|
| Q |
101 |
acatgtt---gagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
166 |
Q |
| |
|
|||| || |||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
48279745 |
acatcttattgagagaagagcagtatctaccttttctgaa---gagaagaaagaacatgaaagttttct |
48279680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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