View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10071_low_18 (Length: 244)
Name: NF10071_low_18
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10071_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35383977 - 35384201
Alignment:
| Q |
1 |
gtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagttcaatttatttgttcactttgcaaaatgtactatgtttcataaac |
100 |
Q |
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| T |
35383977 |
gtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagctcaatttatttgttccctttgcaaaatgtactatgtttcataaac |
35384076 |
T |
|
| Q |
101 |
gttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgnnnnnnnattggtggtaagtactatttttatttggtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35384077 |
gttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgtttttttattggtggtaagtactatttttatttggtac |
35384176 |
T |
|
| Q |
201 |
tttaagttgtgtaattgcagataca |
225 |
Q |
| |
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|||| ||||||||||||| ||||| |
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| T |
35384177 |
gttaaattgtgtaattgcatataca |
35384201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 35387865 - 35388047
Alignment:
| Q |
40 |
atttaattcaaatagttcaatttatttgttcactttgcaaaatgtactatgtttcataaacgttgcaataccattagcttatacaagattttatttaatt |
139 |
Q |
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||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
35387865 |
atttaattcaaatagctcaatttatttgtcccctttgcaaaatgtactatgtttcagaaatgttgcaatacctttagcttatacaagattttatttaatt |
35387964 |
T |
|
| Q |
140 |
caatttattctctgttatatttgnnnnnnnattggtggtaagtactatttttatttggtactttaagttgtgtaattgcagataca |
225 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35387965 |
caatttattccctgttatattt---tttttattggtggtaagtactatttttatttggtactttaagttgtgtaattgctgataca |
35388047 |
T |
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