View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10071_low_19 (Length: 242)

Name: NF10071_low_19
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10071_low_19
NF10071_low_19
[»] chr2 (2 HSPs)
chr2 (1-223)||(30551589-30551811)
chr2 (10-222)||(30560258-30560470)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30551811 - 30551589
Alignment:
Q  1 ttaagcatcgactataaaccttgatggcatatttacatgatttatttgaatgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaa 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551811 ttaagcgtcgactataaaccttgatggcatatttacttgatttatttgaatgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaa 30551712  T
Q  101 actaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaagtgggcgaatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551711 actaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaagtgggcgaatca 30551612  T
Q  201 ctcactaatttaaccccagaaaa 223  Q
    |||||||||||||||||||||||    
T  30551611 ctcactaatttaaccccagaaaa 30551589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 30560470 - 30560258
Alignment:
Q  10 gactataaaccttgatggcatatttacatgatttatttgaatgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaaactaatgtt 109  Q
    |||||||||| ||||||||| ||||| | | ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  30560470 gactataaactttgatggcaaatttaaacgctttatttgaatgacggttccatattgctatggaaaacttctcaagtaaaggtacttgtaaactaatgtt 30560371  T
Q  110 ttgtgttgttggccattcacaccctctagcttcaaacactttgagaatcgggaaattgagagttatatctttcgaacaagtgggcgaatcactcactaat 209  Q
     |||||||||| |||||  |||||||| |||||||||||||||||||| |||||| | ||| |||||||||| ||| ||  ||  ||||||||||  ||     
T  30560370 ctgtgttgttgaccatttgcaccctctggcttcaaacactttgagaattgggaaactaagatttatatcttttgaataatcggaagaatcactcaacaac 30560271  T
Q  210 ttaaccccagaaa 222  Q
    |||| ||||||||    
T  30560270 ttaatcccagaaa 30560258  T

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