View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10071_low_20 (Length: 235)

Name: NF10071_low_20
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10071_low_20
NF10071_low_20
[»] chr4 (7 HSPs)
chr4 (29-217)||(2664707-2664896)
chr4 (25-209)||(42883524-42883708)
chr4 (27-193)||(52648211-52648378)
chr4 (101-206)||(14461679-14461785)
chr4 (130-208)||(9474976-9475054)
chr4 (30-81)||(32103163-32103214)
chr4 (24-127)||(9474852-9474956)
[»] chr3 (3 HSPs)
chr3 (23-206)||(22509500-22509685)
chr3 (26-208)||(39622055-39622238)
chr3 (32-209)||(39703104-39703281)
[»] scaffold0129 (1 HSPs)
scaffold0129 (25-217)||(7454-7647)
[»] chr5 (5 HSPs)
chr5 (24-206)||(23120898-23121082)
chr5 (25-217)||(14009597-14009791)
chr5 (40-209)||(28313418-28313588)
chr5 (25-86)||(19321199-19321260)
chr5 (26-86)||(12036706-12036766)
[»] chr2 (4 HSPs)
chr2 (25-206)||(43525364-43525547)
chr2 (39-217)||(12054958-12055137)
chr2 (26-127)||(37551686-37551788)
chr2 (55-191)||(40355305-40355444)
[»] chr8 (1 HSPs)
chr8 (25-206)||(12868228-12868411)
[»] chr7 (5 HSPs)
chr7 (25-206)||(41596758-41596941)
chr7 (27-209)||(33532126-33532306)
chr7 (24-165)||(17174734-17174876)
chr7 (22-87)||(21525581-21525646)
chr7 (26-90)||(42453011-42453075)
[»] scaffold0711 (1 HSPs)
scaffold0711 (24-206)||(7-191)
[»] chr6 (3 HSPs)
chr6 (25-204)||(15667008-15667187)
chr6 (25-165)||(17912134-17912275)
chr6 (24-134)||(20431536-20431646)
[»] chr1 (4 HSPs)
chr1 (28-209)||(20256281-20256462)
chr1 (26-150)||(44316016-44316141)
chr1 (25-86)||(42677972-42678033)
chr1 (25-86)||(41946169-41946230)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 2664707 - 2664896
Alignment:
Q  29 ggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagtttca 127  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||||| |||||||||||||    
T  2664707 ggcggagctagaaaaaatatcgagggtgggccagcaaaatatactctaatatataaacataaatttttcagttgtaatagacgctaagcacaaagtttca 2664806  T
Q  128 gcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaacacataact 217  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  2664807 tcaaaaaagtaaactacataccttagaaaatttaaataagtcgttacgcgatccaactaacttgaaatcatcaataactaactcataact 2664896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 42883524 - 42883708
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagt 123  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||    |||||||||||||| |||||||||    
T  42883524 cagtggctgagctagaaaaaatatcgagggtgggccaacaaaatatactctaatatatgaacataaactttttagttgtaataaacgctaagcacaaagt 42883623  T
Q  124 ttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaac 209  Q
    |||| |||||| ||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  42883624 ttcatcaaaaa-gtaaagtacatactttagaaaattaaaataagtcgttatgcgatccaactaacttgaaattatcaataactaac 42883708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 52648211 - 52648378
Alignment:
Q  27 gtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaagttt 125  Q
    ||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||   ||||||||||||| ||||||||||||    
T  52648211 gtggcggagctagaaaaaatatcgaggatgggctagcaaaatatactctaatatataaacataaatttttcagttgtaataaacgctaagcacaaagttt 52648310  T
Q  126 cagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaa 193  Q
    || |||||||||||||||||||||||||||||||||||||| | ||||||  || |||||||||||||    
T  52648311 catcaaaaaagtaaactacataccttagaaaattaaaataattggttacgtaatccaactaacttgaa 52648378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 14461785 - 14461679
Alignment:
Q  101 tgtaataaacgcta-gcacaaagtttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatc 199  Q
    |||||||||||||| |||||||||||   ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14461785 tgtaataaacgctaagcacaaagtttagtcaaaaaagtaaactatatactttagaaaattaaaataagtcgttacgcgatccaactaacttgaaatcatc 14461686  T
Q  200 aataact 206  Q
    |||||||    
T  14461685 aataact 14461679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 9474976 - 9475054
Alignment:
Q  130 aaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaa 208  Q
    |||||||||||||| | |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  9474976 aaaaaagtaaactataaaccttagaaaattaaaataagtcgttgcacgatccaactaacttgaaatcatcaataactaa 9475054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 32103163 - 32103214
Alignment:
Q  30 gcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatata 81  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  32103163 gcggagctagaaaaaatgtcgggggtgggccagcaaaatatactctaatata 32103214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 9474852 - 9474956
Alignment:
Q  24 acagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaag 122  Q
    |||||||||||| | |||||||||||| || |||  |||||||||||| | ||||||||||  |||||||||||   ||||||||||||| | |||||||    
T  9474852 acagtggcggagtttgaaaaaatatcgcggatggatcagcaaaatatattttaatatataattataaacttttctgttgtaataaacgctaaacacaaag 9474951  T
Q  123 tttca 127  Q
    |||||    
T  9474952 tttca 9474956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 22509500 - 22509685
Alignment:
Q  23 aacagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaa-cataaacttttcgtatgtaataaacgcta-gcacaa 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||   | |||||||||||| ||||||    
T  22509500 aacagtggcggagctagaaaaaatatcgggggtgggccagcaaaatatactctaatatataaaacataaatttttcagttataataaacgctaagcacaa 22509599  T
Q  121 agtttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22509600 agtttaatcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataact 22509685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 39622238 - 39622055
Alignment:
Q  26 agtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagtt 124  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||||  |||||   |||||||||||||| ||||||||||    
T  39622238 agtggcggagctagaaaaaatatcggaggtgggcaagcaaaatatactctaatatataagcataattttttctgttgtaataaacgctaagcacaaagtt 39622139  T
Q  125 tcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaa 208  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  39622138 tcatcaaaaaagtaaactacataccttaaaaaattaaaataagtcgttacacgatccaactaatttgaaatcatcaataactaa 39622055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 39703281 - 39703104
Alignment:
Q  32 ggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgctag-cacaaagtttcagca 130  Q
    |||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||   ||||||||||||||  || ||||||||| ||    
T  39703281 ggagctagaaaaaatatcgagggtgggctaacaaaatatactctaatatataaacataaacttttcagttgtaataaacgctaaacataaagtttcatca 39703182  T
Q  131 aaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaac 209  Q
    |||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||||||    
T  39703181 aaaa-gtaaactacataccttagaaaattaaaataagtcattatgcgatccaactaactttaaattatcaataactaac 39703104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 7454 - 7647
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagt 123  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||   |||||||||||||| |||||||||    
T  7454 cagtggtggagctagaaaaaatatcgagggtgggccagcaaaatatactataatatataaacataaatttttcagttgtaataaacgctaagcacaaagt 7553  T
Q  124 ttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaacacataact 217  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||| |||||||    
T  7554 ttcatcaaaaaagtaaactacataccatagaaaattaaaataagtcgttacacgatccaactaagttgtaatcatcaataactaactcataact 7647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 23120898 - 23121082
Alignment:
Q  24 acagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaa-cataaacttttcgtatgtaataaacgcta-gcacaaa 121  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||   |||||||||| ||| |||||||    
T  23120898 acagtggcagaggtagaaaaaatatcgggggtgggccagcaaaatatactctaatatataaaacataaatttttcagttgtaataaactctaagcacaaa 23120997  T
Q  122 gtttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23120998 gtttaatcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataact 23121082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 14009791 - 14009597
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac-ataaacttttcgtatgtaataaacgcta-gcacaaag 122  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||   || ||||||||||| ||||||||    
T  14009791 cagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaag 14009692  T
Q  123 tttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaacacataact 217  Q
    ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  14009691 tttaatcaaaaaagtaaactacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcataact 14009597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 28313588 - 28313418
Alignment:
Q  40 aaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgctag-cacaaagtttcagcaaaaaagta 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||| ||  |||| ||||||| |||||||| |    
T  28313588 aaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaatttttttgttgtaataaacgttaaacacagagtttcatcaaaaaagaa 28313489  T
Q  139 aactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaac 209  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  28313488 aactacataccttagaaaattaaaataagtcgttacgtgatccaattaacttgaaatcatcaataactaac 28313418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 19321260 - 19321199
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac 86  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  19321260 cagtggcggagctagaaaaaatatcgagggtgggccagcaaattatactataatatataaac 19321199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12036766 - 12036706
Alignment:
Q  26 agtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac 86  Q
    |||||| ||||| |||||||||||| |||||| |||||||| |||||||||||||||||||    
T  12036766 agtggcagagctagaaaaaatatcgagggtggaccagcaaattatactctaatatataaac 12036706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 43525547 - 43525364
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac-ataaacttttcgtatgtaataaacgcta-gcacaaag 122  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||   || ||||||||||| ||||||||    
T  43525547 cagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaag 43525448  T
Q  123 tttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43525447 tttaatcaaaaaagtaaactacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataact 43525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 12054958 - 12055137
Alignment:
Q  39 gaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgctag-cacaaagtttcagcaaaaaagt 137  Q
    |||||||||||  |||||||||||||||||||||||  ||||||||||||||| || ||   |||||||||||| |  |||||||||||| ||||| |||    
T  12054958 gaaaaaatatctcgggtgggccagcaaaatatactcggatatataaacataaatttgtctgttgtaataaacgccaaacacaaagtttcatcaaaatagt 12055057  T
Q  138 aaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaacacataact 217  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| || ||| |||||||    
T  12055058 aaactacataccttagaaaattaaaataattcgttatgcgatccaactaacttgaaatcatcaatgaccaactcataact 12055137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 37551686 - 37551788
Alignment:
Q  26 agtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaagtt 124  Q
    ||||||| |||| |||||||| ||| || ||| ||| ||||||||||||||||||||||||||||| |||||   ||||||||||||| |||||||||||    
T  37551686 agtggcgaagctagaaaaaatgtcgaggatggaccaacaaaatatactctaatatataaacataaatttttcagttgtaataaacgctaagcacaaagtt 37551785  T
Q  125 tca 127  Q
    |||    
T  37551786 tca 37551788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 40355305 - 40355444
Alignment:
Q  55 tgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgctagcacaaagtttcagcaaaaaagtaaa-----ctacatacc 149  Q
    |||||||| |||||| ||| ||||||||||||||||  |||| || |||||||||| |||  |||||||||||  ||||||  |||     |||||||||    
T  40355305 tgggccagtaaaataaactttaatatataaacataattttttagt-tgtaataaacactaa-acaaagtttcataaaaaaaaaaaaaaaacctacatacc 40355402  T
Q  150 ttagaaaattaaaataagtcgttacgcgatacaactaacttg 191  Q
    ||||||||||||||||| || ||||||||| |||||||||||    
T  40355403 ttagaaaattaaaataaatcattacgcgatccaactaacttg 40355444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 12868228 - 12868411
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac-ataaacttttcgtatgtaataaacgcta-gcacaaag 122  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||   || ||||||||||| ||||||||    
T  12868228 cagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaag 12868327  T
Q  123 tttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    ||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  12868328 tttaatcaaaaaagtaaactacataccttaggaaattaaaataagtcgttacgtgatccaactaacttgaaatcatcaataact 12868411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 41596941 - 41596758
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac-ataaacttttcgtatgtaataaacgcta-gcacaaag 122  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||   || ||||||||||| ||||||||    
T  41596941 cagtggcggagttagaaaaaatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaag 41596842  T
Q  123 tttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41596841 tttaatcaaaaaagtaaactacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataact 41596758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 33532306 - 33532126
Alignment:
Q  27 gtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagttt 125  Q
    |||| |||||| ||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| |||||   |||||||||||||| |||||||||||    
T  33532306 gtggtggagctagaaaaaatatttggggtgggccaacaaaacatactctaatatataaacataaatttttctcttgtaataaacgctaagcacaaagttt 33532207  T
Q  126 cagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaac 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| || ||   |||||||||| || ||||||||||    
T  33532206 catcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcaatcca---aacttgaaataattaataactaac 33532126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 17174734 - 17174876
Alignment:
Q  24 acagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaag 122  Q
    ||||||||||| ||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  17174734 acagtggcggatctggaaaaaatattgagggtgggccagtaaaatataccctaatatataaacataaacttttcatatgtaataaacgctaagcacaaag 17174833  T
Q  123 tttcagcaaaaaagtaaactacataccttagaaaattaaaata 165  Q
    |||||  ||||||||||||||||||| ||||||||||||||||    
T  17174834 tttcataaaaaaagtaaactacatactttagaaaattaaaata 17174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 21525581 - 21525646
Alignment:
Q  22 gaacagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaaca 87  Q
    ||||||||||| | || |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21525581 gaacagtggcgaaactagaaaaaatatcgagggtgtgccagcaaaatatactctaatatataaaca 21525646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 42453075 - 42453011
Alignment:
Q  26 agtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataa 90  Q
    |||||| ||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  42453075 agtggcagagctagaaaaaatatcgagggtgggccaacaaaatatactctaatatgtaaacataa 42453011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 191 - 7
Alignment:
Q  24 acagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac-ataaacttttcgtatgtaataaacgcta-gcacaaa 121  Q
    |||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||  ||||| |||||   || ||||||||||| |||||||    
T  191 acagtgacggagctagaaaaaatatcggggttgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaa 92  T
Q  122 gtttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataact 206  Q
    |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  91 gtttaatcaaaaaagtaaactacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataact 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 15667008 - 15667187
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgcta-gcacaaagt 123  Q
    ||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||| | |||||   ||||||||| |||| |||||| ||    
T  15667008 cagtggcggagctagaaaaaatatagggg-tggaccagcaaaatatactctaatatataaacatacatttttctgttgtaataaatgctaagcacaacgt 15667106  T
Q  124 ttcagcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataa 204  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  ||| ||||| ||||||||||||||||||||||||    
T  15667107 ttcatcaaaaaagtaaactacataccttaaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaataa 15667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 17912134 - 17912275
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaagt 123  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||||||||||||| | ||||||||    
T  17912134 cagtggcggagctggaaaaaatatcgagggtgggccagtaaaatatattgtaatatataaatataaacttttcatatgtaataaacgctaatcacaaagt 17912233  T
Q  124 ttcagcaaaaaagtaaactacataccttagaaaattaaaata 165  Q
    ||||  ||||||||||||||||||| ||| ||||||||||||    
T  17912234 ttcataaaaaaagtaaactacatactttataaaattaaaata 17912275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 20431536 - 20431646
Alignment:
Q  24 acagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaag 122  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||| | |||||||    
T  20431536 acagtggcggagctataaaaaatatcgtgggtggaccagcaaaatatactctaatatataaacataaactttatgt-tgtaataaacgctaaacacaaag 20431634  T
Q  123 tttcagcaaaaa 134  Q
    ||||| ||||||    
T  20431635 tttcatcaaaaa 20431646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 20256281 - 20256462
Alignment:
Q  28 tggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgctag-cacaaagtttc 126  Q
    |||||||||| | ||||||||   ||||| ||||| |||||| ||||||||||||||||||||| |||| || ||||||||||||||  |||||| ||||    
T  20256281 tggcggagctaggaaaaatattttgggtgtgccagtaaaataaactctaatatataaacataaattttttgt-tgtaataaacgctaaacacaaaatttc 20256379  T
Q  127 agcaaaaaagtaaactacataccttagaaaattaaaataagtcgttacgcgatacaactaacttgaaatcatcaataactaac 209  Q
    | ||||||| |||||||||||||||| ||||||||||||| |  |||||||||  ||||||||| ||||||||||||||||||    
T  20256380 atcaaaaaattaaactacataccttaaaaaattaaaataattatttacgcgatctaactaacttaaaatcatcaataactaac 20256462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 44316016 - 44316141
Alignment:
Q  26 agtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaacataaacttttcgtatgtaataaacgct-agcacaaagtt 124  Q
    ||||||||||||| ||| | |||   |||||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||| | |||||||||    
T  44316016 agtggcggagctgaaaacattattatgggtgggcctacaaaatatactctaatatataaacataaacttttctgttgtaataaacgctaaacacaaagtt 44316115  T
Q  125 tcagcaaaaaagtaaactacatacct 150  Q
    ||| ||||||||||||||||||||||    
T  44316116 tcatcaaaaaagtaaactacatacct 44316141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 42678033 - 42677972
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac 86  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||    
T  42678033 cagtggcggagctagaaaaaatatcgagggtgggctagcaaattatactctaatatataaac 42677972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 41946230 - 41946169
Alignment:
Q  25 cagtggcggagctggaaaaaatatcgggggtgggccagcaaaatatactctaatatataaac 86  Q
    |||||| |||||| |||||||||||  |||||||| |||||  |||||||||||||||||||    
T  41946230 cagtggtggagctagaaaaaatatcaagggtgggctagcaatttatactctaatatataaac 41946169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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