View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10071_low_3 (Length: 509)

Name: NF10071_low_3
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10071_low_3
NF10071_low_3
[»] chr7 (27 HSPs)
chr7 (1-318)||(18756913-18757230)
chr7 (253-394)||(37928274-37928415)
chr7 (244-328)||(19677035-19677119)
chr7 (262-396)||(23142660-23142794)
chr7 (407-476)||(18756531-18756600)
chr7 (244-370)||(16685729-16685857)
chr7 (244-370)||(17659965-17660093)
chr7 (256-396)||(8896599-8896738)
chr7 (248-372)||(1309717-1309841)
chr7 (253-396)||(16979914-16980057)
chr7 (262-313)||(31249568-31249619)
chr7 (244-318)||(18220975-18221049)
chr7 (247-327)||(23317790-23317870)
chr7 (244-303)||(34993087-34993146)
chr7 (253-385)||(42888290-42888418)
chr7 (251-329)||(8746175-8746252)
chr7 (244-317)||(1554008-1554081)
chr7 (256-329)||(12810148-12810221)
chr7 (253-326)||(31850746-31850819)
chr7 (253-314)||(43118860-43118921)
chr7 (256-328)||(21515059-21515131)
chr7 (251-314)||(18037846-18037909)
chr7 (289-326)||(23080659-23080696)
chr7 (295-396)||(30027936-30028037)
chr7 (248-318)||(41064294-41064368)
chr7 (246-314)||(28004227-28004295)
chr7 (254-318)||(45907033-45907097)
[»] chr2 (25 HSPs)
chr2 (253-402)||(13738393-13738542)
chr2 (251-376)||(4978748-4978873)
chr2 (262-376)||(4996667-4996781)
chr2 (255-329)||(23453384-23453458)
chr2 (253-396)||(8580484-8580627)
chr2 (251-329)||(18717889-18717967)
chr2 (244-399)||(4557540-4557696)
chr2 (244-311)||(1004764-1004831)
chr2 (289-396)||(6315859-6315966)
chr2 (244-359)||(40346717-40346832)
chr2 (253-396)||(40574141-40574284)
chr2 (255-394)||(14952998-14953138)
chr2 (253-396)||(42551961-42552102)
chr2 (253-311)||(17641231-17641289)
chr2 (251-401)||(31904219-31904368)
chr2 (244-328)||(1870483-1870567)
chr2 (254-318)||(32909404-32909468)
chr2 (253-312)||(3689617-3689676)
chr2 (251-326)||(7141156-7141231)
chr2 (255-329)||(4186411-4186485)
chr2 (253-311)||(42850373-42850431)
chr2 (251-376)||(9021465-9021590)
chr2 (340-401)||(34334462-34334523)
chr2 (244-305)||(36087406-36087467)
chr2 (341-394)||(42251581-42251634)
[»] chr8 (30 HSPs)
chr8 (256-396)||(11150895-11151034)
chr8 (244-396)||(20542359-20542511)
chr8 (255-382)||(32881099-32881226)
chr8 (244-401)||(41726863-41727020)
chr8 (244-396)||(3137372-3137524)
chr8 (253-329)||(10029201-10029277)
chr8 (253-329)||(44648936-44649012)
chr8 (234-329)||(17720157-17720252)
chr8 (253-366)||(18200679-18200792)
chr8 (225-329)||(2768531-2768635)
chr8 (253-329)||(3347509-3347585)
chr8 (255-329)||(6270150-6270223)
chr8 (256-318)||(33621416-33621478)
chr8 (256-329)||(600411-600484)
chr8 (253-370)||(35901414-35901531)
chr8 (249-318)||(37561493-37561562)
chr8 (253-329)||(18045322-18045398)
chr8 (241-329)||(42361500-42361588)
chr8 (256-323)||(13873742-13873809)
chr8 (253-326)||(4989737-4989810)
chr8 (253-326)||(40489892-40489964)
chr8 (269-317)||(12201843-12201891)
chr8 (269-317)||(12446271-12446319)
chr8 (251-314)||(31331055-31331118)
chr8 (262-317)||(44947398-44947452)
chr8 (269-323)||(25250345-25250399)
chr8 (251-329)||(23425259-23425341)
chr8 (340-393)||(23725710-23725763)
chr8 (269-329)||(600528-600588)
chr8 (266-318)||(34678218-34678270)
[»] chr6 (10 HSPs)
chr6 (255-399)||(32134015-32134159)
chr6 (255-396)||(5611129-5611270)
chr6 (256-329)||(19320272-19320345)
chr6 (250-326)||(17345837-17345913)
chr6 (225-328)||(17453943-17454046)
chr6 (253-311)||(227392-227450)
chr6 (340-396)||(31223167-31223223)
chr6 (251-299)||(31223253-31223301)
chr6 (225-318)||(17834946-17835039)
chr6 (262-318)||(2613359-2613415)
[»] scaffold0002 (1 HSPs)
scaffold0002 (253-394)||(120643-120784)
[»] chr4 (29 HSPs)
chr4 (244-372)||(27284068-27284196)
chr4 (255-401)||(12094925-12095071)
chr4 (244-329)||(31861417-31861502)
chr4 (225-329)||(12076398-12076502)
chr4 (226-311)||(31089487-31089572)
chr4 (250-329)||(22019642-22019721)
chr4 (244-329)||(2824804-2824890)
chr4 (253-371)||(16341100-16341218)
chr4 (256-329)||(2565412-2565485)
chr4 (248-371)||(20775069-20775192)
chr4 (255-329)||(13967884-13967958)
chr4 (237-329)||(31089767-31089858)
chr4 (225-396)||(52837234-52837408)
chr4 (242-325)||(22611884-22611967)
chr4 (251-326)||(32543978-32544052)
chr4 (259-318)||(44190269-44190328)
chr4 (255-329)||(42595184-42595258)
chr4 (248-329)||(45921332-45921413)
chr4 (269-329)||(7437843-7437903)
chr4 (246-329)||(55090819-55090902)
chr4 (253-327)||(31991456-31991530)
chr4 (251-329)||(37183077-37183155)
chr4 (283-329)||(39810731-39810777)
chr4 (251-315)||(4482132-4482197)
chr4 (244-293)||(19480711-19480760)
chr4 (244-329)||(48419112-48419197)
chr4 (253-318)||(53142831-53142896)
chr4 (289-329)||(19480576-19480616)
chr4 (251-311)||(41142290-41142350)
[»] chr5 (20 HSPs)
chr5 (245-394)||(30840588-30840736)
chr5 (249-326)||(30293817-30293894)
chr5 (253-328)||(11815951-11816026)
chr5 (251-329)||(41645071-41645149)
chr5 (253-396)||(22293956-22294099)
chr5 (236-329)||(36482090-36482183)
chr5 (340-396)||(41175412-41175468)
chr5 (255-328)||(18242479-18242552)
chr5 (253-317)||(8151793-8151857)
chr5 (257-329)||(27544628-27544700)
chr5 (247-310)||(1920738-1920801)
chr5 (251-314)||(3360673-3360736)
chr5 (253-318)||(15139168-15139233)
chr5 (245-318)||(21052618-21052691)
chr5 (253-318)||(2611146-2611212)
chr5 (255-329)||(14044682-14044754)
chr5 (253-299)||(34346951-34346997)
chr5 (272-329)||(2089133-2089190)
chr5 (253-318)||(6102878-6102943)
chr5 (225-293)||(1637946-1638014)
[»] chr3 (23 HSPs)
chr3 (251-384)||(11676732-11676865)
chr3 (244-396)||(48338785-48338937)
chr3 (253-325)||(38359090-38359162)
chr3 (244-328)||(6785783-6785867)
chr3 (244-376)||(28709555-28709687)
chr3 (253-329)||(44698257-44698333)
chr3 (261-329)||(55446771-55446839)
chr3 (253-396)||(1711922-1712065)
chr3 (255-329)||(29032451-29032525)
chr3 (256-329)||(25958060-25958133)
chr3 (253-329)||(635703-635779)
chr3 (253-329)||(4020137-4020213)
chr3 (253-329)||(49261819-49261895)
chr3 (244-283)||(25319578-25319617)
chr3 (253-318)||(15671115-15671180)
chr3 (249-377)||(40460218-40460346)
chr3 (244-396)||(42437705-42437855)
chr3 (280-396)||(31494030-31494146)
chr3 (269-329)||(50958899-50958959)
chr3 (339-396)||(31069644-31069701)
chr3 (253-310)||(48252269-48252326)
chr3 (340-396)||(4128778-4128834)
chr3 (270-318)||(34145920-34145968)
[»] scaffold0204 (1 HSPs)
scaffold0204 (256-370)||(15367-15481)
[»] chr1 (29 HSPs)
chr1 (244-329)||(8001736-8001821)
chr1 (255-396)||(13969099-13969240)
chr1 (225-318)||(46295841-46295934)
chr1 (257-329)||(10226464-10226536)
chr1 (253-372)||(33148129-33148248)
chr1 (255-329)||(27688518-27688592)
chr1 (256-313)||(32187108-32187165)
chr1 (246-327)||(39238872-39238953)
chr1 (253-329)||(26829531-26829607)
chr1 (238-305)||(3529434-3529500)
chr1 (340-399)||(30109195-30109254)
chr1 (253-326)||(5069538-5069611)
chr1 (338-396)||(12527563-12527621)
chr1 (257-318)||(52762304-52762365)
chr1 (250-286)||(26890064-26890100)
chr1 (253-329)||(40699289-40699365)
chr1 (251-310)||(5069761-5069820)
chr1 (253-300)||(39993446-39993493)
chr1 (256-318)||(9209279-9209341)
chr1 (251-329)||(48579935-48580013)
chr1 (246-327)||(38169094-38169175)
chr1 (249-318)||(47496867-47496935)
chr1 (256-329)||(50015776-50015849)
chr1 (340-372)||(5069699-5069731)
chr1 (340-396)||(17644838-17644894)
chr1 (253-293)||(18786447-18786487)
chr1 (249-293)||(28108682-28108726)
chr1 (255-299)||(34347227-34347271)
chr1 (269-325)||(37597146-37597202)
[»] scaffold0079 (1 HSPs)
scaffold0079 (253-371)||(51643-51761)
[»] scaffold0283 (1 HSPs)
scaffold0283 (262-317)||(3376-3431)
[»] scaffold0036 (2 HSPs)
scaffold0036 (346-389)||(36364-36407)
scaffold0036 (256-329)||(36571-36644)
[»] scaffold0329 (1 HSPs)
scaffold0329 (279-329)||(7398-7448)
[»] scaffold0103 (1 HSPs)
scaffold0103 (251-327)||(28845-28921)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 18757230 - 18756913
Alignment:
Q  1 ggacggaaatacaaaccagagatattccaaagcaaaattcttaatacactatcttctatctataaatcctttttgaagaaactaaatgcatcttggtttt 100  Q
    |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18757230 ggacggaaatacaatccggagatattccaaaggaaaattcttaatacactatcttctatctataaatcctttttgaagaaactaaatgcatcttggtttt 18757131  T
Q  101 aggagtaagacatgagaagttgcctcatattccataagagttgtggtgatcaactccatctactagcataaaaactatgttggtaggtggttcattgaag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18757130 aggagtaagacataagaagttgcctcatattccataagagttgtggtgatcaactccatctactagcataaaaactatgttggtaggtggttcattgaag 18757031  T
Q  201 agtgatatctaaataattagacgagtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatg 300  Q
    |||||||| |||||||||||||||||||||| || ||||  | ||| || |||| |||||||||||| ||||| ||||||||||||||||||||||  ||    
T  18757030 agtgatatataaataattagacgagtcttgctaaccagtgccctcatggcattgattaaggaatctacaaatagaaattttgtcttgcaaataaaatgtg 18756931  T
Q  301 ttacttttgatcaagtaa 318  Q
    ||||||||||||||||||    
T  18756930 ttacttttgatcaagtaa 18756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 37928415 - 37928274
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||| ||||||||||||| ||||||| ||||| ||||| || |||||| ||||||| ||||||  |||||||||         ||||||||||||||    
T  37928415 tggttaaagaatctataaatataaattttatcttgaaaatataaaatgttatttttgataaagtaattattacacaacttttttataaaaacttacttat 37928316  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    |||||||||||||||||||  |||  |||||| |||||||||    
T  37928315 tttggatgtttaaccaatgtccttgagacactagttagcatt 37928274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 19677119 - 19677035
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    |||||| ||||||||||||||| | ||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  19677119 tcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattacaca 19677035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 396
Target Start/End: Original strand, 23142660 - 23142794
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnna-aaaaacttacttattttggatg 360  Q
    |||||| ||||| ||||||||| ||| ||||| ||||||||| ||||||||||||||  |||||||||        | ||||||||||||||||||||||    
T  23142660 aatctacaaatagaaattttgt-ttggaaatataagatgttatttttgatcaagtaattattacacaacttttttcataaaaacttacttattttggatg 23142758  T
Q  361 tttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||||||||||  |||||| |||| ||||||    
T  23142759 tttaaccaatgctcttgagacactcgttaacattct 23142794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 407 - 476
Target Start/End: Complemental strand, 18756600 - 18756531
Alignment:
Q  407 tatattttaagctttcagtgttctatgaggtccgactaactcggttgaatcccaaacactcaactggaac 476  Q
    ||||||||| || |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  18756600 tatattttaggcgttcagtgtgccatgaggtccgactaactcgggtgaatcccaaacactcaactggaac 18756531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 16685857 - 16685729
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttact-tttgatcaagtaacgattacacaannnnnnnna-aaa 341  Q
    |||||| |||||||||||||||||  |||| || |||||||||  ||||| ||||||||||| ||||||||||||| ||||||||||        | |||    
T  16685857 tcagggcattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaa 16685758  T
Q  342 aacttacttattttggatgtttaaccaat 370  Q
    ||||||||||||||||||| |||||||||    
T  16685757 aacttacttattttggatgcttaaccaat 16685729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 17660093 - 17659965
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttact-tttgatcaagtaacgattacacaannnnnnnna-aaa 341  Q
    |||||| |||||||||||||||||  |||| || |||||||||  ||||| ||||||||||| ||||||||||||| ||||||||||        | |||    
T  17660093 tcagggcattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaa 17659994  T
Q  342 aacttacttattttggatgtttaaccaat 370  Q
    ||||||||||||||||||| |||||||||    
T  17659993 aacttacttattttggatgcttaaccaat 17659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 396
Target Start/End: Original strand, 8896599 - 8896738
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttatttt 355  Q
    |||| ||||||| ||||| ||||||||||||  ||||| ||||||||||||||||||| |||| ||||||||||          ||||||||||| ||||    
T  8896599 ttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattacacaattttttcatgaaaacttacttgtttt 8896698  T
Q  356 ggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
     ||| || ||||||||||||| ||| |||||||| ||||||    
T  8896699 agat-ttaaaccaatgctcttgggatactggttaacattct 8896738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 1309717 - 1309841
Alignment:
Q  248 ggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaactta 347  Q
    |||| ||||||||||||||| ||||| ||||||| ||||  ||||| || | ||||||||| ||||| |||| |||||||||         ||||| |||    
T  1309717 ggtaatggttaaggaatctacaaatagaaattttatcttaaaaatataatacgttactttttatcaaataactattacacaattttttcataaaaattta 1309816  T
Q  348 cttattttggatgtttaaccaatgc 372  Q
     ||||||||||||||||||||||||    
T  1309817 tttattttggatgtttaaccaatgc 1309841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 16980057 - 16979914
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||| |||| || || || ||||||||||||| ||||| |||||||||||||||||| |||||  || ||||||         ||||| |||||| |    
T  16980057 tggttaaagaatttacaattagaaattttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgt 16979958  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||||| ||||||||||| |||||  |||  |||||||||||    
T  16979957 tttggatgcttaaccaatgcccttagagcaccagttagcattct 16979914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 31249619 - 31249568
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatca 313  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  31249619 aatctataaatataaattttgtcttgaaaatataagatgttacttttgatca 31249568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 18220975 - 18221049
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||||||||||||||||  |||| || ||||| |||| ||||| |||||||||| |||||| ||||||    
T  18220975 tcagggtattggttaaggaatctactaatagaagttttgacttggaaatataagatgttacatttgattaagtaa 18221049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 23317790 - 23317870
Alignment:
Q  247 gggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacac 327  Q
    ||||||||||||||||||| | || |||||| |||| ||   |||| ||||||||||||||||||||||| | ||||||||    
T  23317790 gggtattggttaaggaatccacaattaaaaaatttgcctcagaaattaaagatgttacttttgatcaagttatgattacac 23317870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 34993087 - 34993146
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgtta 303  Q
    |||||| | ||||||||||||||| ||||| ||||||||||||| ||||| |||||||||    
T  34993087 tcagggcaatggttaaggaatctacaaatataaattttgtcttgaaaatataagatgtta 34993146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 385
Target Start/End: Complemental strand, 42888418 - 42888290
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| |||||||  ||||  |||| ||||| |||||||| |||||||| |||||| |||| |||||          |||||||||||||    
T  42888418 tggttaaggaatctacaaataaattttttaacttgaaaatataagatgttgcttttgataaagtaatgattgcacaaattttctatgaaaacttacttat 42888319  T
Q  353 tttggatgtttaaccaatgctcttaggacactg 385  Q
    ||| ||||||||||    |||||||||||||||    
T  42888318 tttagatgtttaac----gctcttaggacactg 42888290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 8746252 - 8746175
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| |||  |||||||||||||||||| ||||| |  ||||||||||||||||| ||| ||||| ||||    
T  8746252 attggttaaggaa-ctactaataaaaattttgtcttgtaaatatagaatgttacttttgatcaaataatgattatacaa 8746175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 1554008 - 1554081
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    |||| ||| ||||||| ||||||| |||||||||| |||||||  ||||| ||||||||||||| ||| |||||    
T  1554008 tcagagtagtggttaaagaatctacaaataaaaatgttgtcttagaaatataagatgttactttagataaagta 1554081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 12810148 - 12810221
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| |||||||||||| |||||||||||||  ||||| ||||| ||||||||||  ||||||  |||||||||    
T  12810148 ttaatgaatctataaatgaaaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaa 12810221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 31850746 - 31850819
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    |||||||  |||| ||||||||||||||||||||  ||||| |||||||||||||| || || ||| |||||||    
T  31850746 tggttaaaaaatccataaataaaaattttgtcttagaaatataagatgttacttttaataaaataatgattaca 31850819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 43118921 - 43118860
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaa 314  Q
    |||||||| |||||| ||||| ||||||||||||| |||||  ||||||||| |||||||||    
T  43118921 tggttaagaaatctacaaatataaattttgtcttgaaaatatgagatgttacatttgatcaa 43118860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 21515131 - 21515059
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    |||||||||||||||||| |||||||  | || ||||| |||||||||||||| ||||| |||  ||||||||    
T  21515131 ttaaggaatctataaatagaaattttaacatgaaaatacaagatgttacttttaatcaaataataattacaca 21515059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 18037846 - 18037909
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaa 314  Q
    |||| ||||| |||| ||||||||||||||||| ||| ||||| ||  ||||||||||||||||    
T  18037846 attgattaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaa 18037909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 23080659 - 23080696
Alignment:
Q  289 aaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  23080659 aaatataagatgttacttttgatcaagtaatgattaca 23080696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 30028037 - 30027936
Alignment:
Q  295 aagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    ||||||||||||||||| |||||| ||| ||||||          ||| ||||||| || |||||||||||||| | | |||| ||||||||||||||||    
T  30028037 aagatgttacttttgataaagtaatgatcacacaactttttcatgaaatcttacttgttatggatgtttaaccattacccttatgacactggttagcatt 30027938  T
Q  395 ct 396  Q
    ||    
T  30027937 ct 30027936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 41064294 - 41064368
Alignment:
Q  248 ggtattggttaaggaatctataaataaaaattttgtcttgcaaataaa----agatgttacttttgatcaagtaa 318  Q
    |||| ||||||||| || |||||||| ||||||| ||||| ||||| |    |||||||||||||||||||||||    
T  41064294 ggtaatggttaagggatttataaatagaaattttatcttgaaaatatatataagatgttacttttgatcaagtaa 41064368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 28004295 - 28004227
Alignment:
Q  246 agggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaa 314  Q
    ||||||||||||||  |||||| |||||||| |||||||||| ||||| ||| | ||  ||||||||||    
T  28004295 agggtattggttaaaaaatctaaaaataaaatttttgtcttgaaaatataagcttttggttttgatcaa 28004227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 45907033 - 45907097
Alignment:
Q  254 ggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||||||||||||||| |  |||||||||| ||||| ||  ||| |||||| |||||||||    
T  45907033 ggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttatcaagtaa 45907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 13738393 - 13738542
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||| |||||| ||||||||||         |||||||||||| |    
T  13738393 tggttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgt 13738492  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattcttctaac 402  Q
    |||||||| |||||||||   ||||||||||| |||  |||||| |||||    
T  13738493 tttggatgcttaaccaatatccttaggacactagttgccattctcctaac 13738542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 376
Target Start/End: Original strand, 4978748 - 4978873
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttactt 350  Q
    |||||||||  ||||||| |||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||||         ||||||||| ||    
T  4978748 attggttaaaaaatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttattt 4978847  T
Q  351 attttggatgtttaaccaatgctctt 376  Q
    ||||||||||||||||||||| ||||    
T  4978848 attttggatgtttaaccaatgttctt 4978873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 376
Target Start/End: Original strand, 4996667 - 4996781
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattttggatgt 361  Q
    ||||||| |||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||||         ||||||||| |||||||||||||    
T  4996667 aatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgt 4996766  T
Q  362 ttaaccaatgctctt 376  Q
    |||||||||| ||||    
T  4996767 ttaaccaatgttctt 4996781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 23453458 - 23453384
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||    
T  23453458 gttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaa 23453384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 8580627 - 8580484
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||| || |||||||||| || | |||||||| ||||| ||||||||||||||||| ||||||  |||| |||           |||||| |||||     
T  8580627 tggttaaagattctataaatagaattgttgtcttggaaatataagatgttacttttgattaagtaataattagacacatttttcatgaaaactaacttac 8580528  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||    
T  8580527 tttggatgcttaaccaatgcccttagggcactggttagcattct 8580484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 18717967 - 18717889
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||||||| || ||||| ||||||| | ||  ||||| |||||||||||||||||||||||| ||||||||||    
T  18717967 attggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacacaa 18717889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 399
Target Start/End: Complemental strand, 4557696 - 4557540
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnna-aaaa 342  Q
    |||||| | ||||||| ||||||| ||||| ||||||| ||||| ||||| |||| |||| |||||||  |||||  ||||| |||        | ||||    
T  4557696 tcagggcaatggttaaagaatctacaaatagaaattttatcttggaaatataagaagttatttttgattgagtaattattactcaacttttttcataaaa 4557597  T
Q  343 acttacttattttggatgtttaaccaatgctcttaggacactggttagcattcttct 399  Q
    |||||||||| ||||||| ||||||| ||| |||||| |||||||||| ||||||||    
T  4557596 acttacttatcttggatgcttaaccattgcccttagggcactggttagtattcttct 4557540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 1004764 - 1004831
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||| ||||| || || |||||||||||    
T  1004764 tcagggtaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatattacttttgat 1004831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 6315966 - 6315859
Alignment:
Q  289 aaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattttggatgtttaaccaatgctcttaggacactggtt 388  Q
    ||||| ||||||||| |||||||||||||| ||||||||||         ||||| ||| || ||||||||||||||||||||||||| |  ||||||||    
T  6315966 aaatataagatgttatttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaaccaatgctcttggagcactggtt 6315867  T
Q  389 agcattct 396  Q
    | ||||||    
T  6315866 atcattct 6315859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 359
Target Start/End: Complemental strand, 40346832 - 40346717
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||| ||| ||||||||||||||| | ||| ||||||||| ||| ||||| ||||||||| |||||||||| ||| |||| |||||         |||||    
T  40346832 tcagagtaatggttaaggaatctacatatagaaattttgtattgaaaatataagatgttatttttgatcaaataatgattgcacaactttttcataaaaa 40346733  T
Q  344 cttacttattttggat 359  Q
    ||||||||||||||||    
T  40346732 cttacttattttggat 40346717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 40574141 - 40574284
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| || |||| |||||||||  |||||  |||||||||          ||||  ||||| |    
T  40574141 tggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtacttgt 40574240  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||||| ||||||| ||| ||| || ||||||||||||||||    
T  40574241 tttggatgcttaaccattgcccttggggcactggttagcattct 40574284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 394
Target Start/End: Complemental strand, 14953138 - 14952998
Alignment:
Q  255 gttaaggaatctat-aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttatt 353  Q
    |||||||||||||  ||||||||||||||||||  ||||| || |||||| |||||||| ||||| ||||| ||||         | ||| |||||||||    
T  14953138 gttaaggaatctacgaaataaaaattttgtcttaaaaatataaaatgttatttttgatcgagtaatgattagacaatttttttttacaaatttacttatt 14953039  T
Q  354 ttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    ||||||| |||||||||  ||||||  |||| |||||||||    
T  14953038 ttggatgcttaaccaatattcttagagcacttgttagcatt 14952998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 42551961 - 42552102
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| |||||||| |||||||||| | ||| || || ||| |||| ||||| |||||||| ||||          |||||||||||| |    
T  42551961 tggttaaggaatctacaaataaaatttttgtcttgaagatataa-atattattttttatcaaataacgattgcacatctttttcataaaaacttacttgt 42552059  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||| |||||||||||||| || | || ||||||||||||||||    
T  42552060 tttgtatgtttaaccaatg-tcattgggcactggttagcattct 42552102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 17641289 - 17641231
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    ||||||||||||||||||||||||| ||||| ||  ||||| || ||||||||||||||    
T  17641289 tggttaaggaatctataaataaaaactttgtttttgaaatataaaatgttacttttgat 17641231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 31904219 - 31904368
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttactt 350  Q
    |||| ||||| | |||| ||||||| ||||| ||||  ||||| || |||||| |||| ||||||||| ||||||||||        | |||| ||||||    
T  31904219 attgattaagaattctacaaataaatattttatcttaaaaatataaaatgttatttttaatcaagtaatgattacacaattttttc-ataaaatttactt 31904317  T
Q  351 attttggatgtttaaccaatgctcttaggacactggttagcattcttctaa 401  Q
    ||||| |||| ||||||||||| ||| | ||| |||||| |||||||||||    
T  31904318 attttagatgattaaccaatgcccttggaacaatggttaacattcttctaa 31904368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 1870483 - 1870567
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    |||||| | ||||||||||| ||||||||| ||| ||||||||| ||||| ||| | | ||||||||| ||||||  ||||||||    
T  1870483 tcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataattacaca 1870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 32909404 - 32909468
Alignment:
Q  254 ggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||| ||| || ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||    
T  32909404 ggttaagaaatatacaaatataaattttgtcttggaaatataagatattacttttgataaagtaa 32909468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 3689617 - 3689676
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatc 312  Q
    |||||||||| |||| ||||| ||||||| ||||  ||||| ||||||||||||||||||    
T  3689617 tggttaaggattctacaaatagaaattttatctttgaaatataagatgttacttttgatc 3689676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 7141231 - 7141156
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    |||||||||||| || || |||| ||||||||||||| ||| | ||| |||||||||||| ||| ||| |||||||    
T  7141231 attggttaaggattcaatgaatagaaattttgtcttgaaaacataaggtgttacttttgaccaaataatgattaca 7141156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 4186485 - 4186411
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||| |||||| ||||||||||||| | ||| ||||| || ||||||| ||||||| |||||  |||||||||    
T  4186485 gttaagaaatctacaaataaaaattttattttgaaaatataaaatgttacatttgatctagtaataattacacaa 4186411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 42850431 - 42850373
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    ||||||| ||||||||||||| ||||||| ||||| ||||| ||||| ||| |||||||    
T  42850431 tggttaaagaatctataaatagaaattttatcttgtaaatataagatattaattttgat 42850373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 9021590 - 9021465
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttactt 350  Q
    ||||||||||||| | |||| || ||||||||||||| ||||  ||||||||| ||||||  || ||| |||||||| |          ||||||| |||    
T  9021590 attggttaaggaacccataactagaaattttgtcttggaaatgtaagatgttatttttgactaaataatgattacactatttttttgtgaaaactttctt 9021491  T
Q  351 attttggatgtttaaccaatgctctt 376  Q
    |||||||||  |||||||||||||||    
T  9021490 attttggatacttaaccaatgctctt 9021465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 34334523 - 34334462
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattcttctaa 401  Q
    |||| |||||| ||| ||||| ||||||| ||||||||| ||| ||||||||||||| ||||    
T  34334523 aaaatttacttgtttaggatgcttaaccattgctcttagaacattggttagcattctcctaa 34334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 36087467 - 36087406
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttact 305  Q
    |||||| | ||||||||||||||| ||||| ||||||| ||||  ||||| |||||||||||    
T  36087467 tcagggcaatggttaaggaatctacaaatagaaattttatcttagaaatataagatgttact 36087406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 42251634 - 42251581
Alignment:
Q  341 aaacttacttattttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    |||||||||| ||||||||| ||||||||||| |||  |||||| |||||||||    
T  42251634 aaacttacttgttttggatgcttaaccaatgcccttgagacactagttagcatt 42251581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 396
Target Start/End: Complemental strand, 11151034 - 11150895
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttatttt 355  Q
    |||||||||||| |||||||| |||||||||  ||||| |||||||||||||||||||| ||| ||||||||||         |||||||||||||||||    
T  11151034 ttaaggaatctacaaataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgattacacaatttttttt-aaaaacttacttatttt 11150936  T
Q  356 ggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    | ||| ||||||||||| |||||| || |||||||||||||    
T  11150935 gaatgcttaaccaatgcccttagggcagtggttagcattct 11150895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 244 - 396
Target Start/End: Complemental strand, 20542511 - 20542359
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||| ||||| ||||||||||||||||| |||||| |||||||||          |||||    
T  20542511 tcagggcattggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattacacacttttttcttaaaaa 20542412  T
Q  344 cttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||  ||||||||| ||||||||||| ||| || ||| ||||||||||||    
T  20542411 cttactcgttttggatgcttaaccaatgcccttggggcacgggttagcattct 20542359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 32881226 - 32881099
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattt 354  Q
    |||||| |||||| ||||||||||||||||||  ||||| ||||| ||| |||| ||||||| | ||||||||||         ||||||||||||||||    
T  32881226 gttaagaaatctacaaataaaaattttgtcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattt 32881127  T
Q  355 tggatgtttaaccaatgctcttaggaca 382  Q
    |||||||||||||||| |||||||||||    
T  32881126 tggatgtttaaccaatactcttaggaca 32881099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 401
Target Start/End: Complemental strand, 41727020 - 41726863
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    ||||| || ||||||||||||||| ||||||||||||||||||| ||||| || |||||| |||| || |||||| ||||||| |          |||||    
T  41727020 tcaggttaatggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaa 41726921  T
Q  344 cttacttattttggatgtttaaccaatgctcttaggacactggttagcattcttctaa 401  Q
    |||||||||||| |||| ||||||| ||| |||||| |||| |||| |||||| ||||    
T  41726920 cttacttattttagatgcttaaccattgcccttagggcactagttatcattctcctaa 41726863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 396
Target Start/End: Complemental strand, 3137524 - 3137372
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| | |||||||| |||  | ||||| ||||||||||||| ||||  ||||||||||||||||||||||||  |||||||||         | |||    
T  3137524 tcagggcaatggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaa 3137425  T
Q  344 cttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||| || |||||||||  ||||||||| ||||||| ||||||||||||||||    
T  3137424 cttatttgttttggatgcctaaccaatgttcttagggcactggttagcattct 3137372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 10029277 - 10029201
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||| ||||    
T  10029277 tggttaagaaatctacaaataaaaattttatcttggaaatataagatgttacttttgatcaagtaatgattatacaa 10029201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 44648936 - 44649012
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||    
T  44648936 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacacaa 44649012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 17720157 - 17720252
Alignment:
Q  234 atcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||| || ||||| |||||||||| ||||||||||||| |||| || ||||| ||||| ||||||||| ||||||||| |||| ||||||||||    
T  17720157 atcagtgtcctcaggatattggttaaagaatctataaatagaaatattttcttgaaaatataagatgttatttttgatcatgtaatgattacacaa 17720252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 18200679 - 18200792
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    |||||||| |||||| ||||||||||||||||||  ||||| || |||||||||||||| |||||| ||||||||||         |||| |||||||||    
T  18200679 tggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttacttat 18200778  T
Q  353 tttggatgtttaac 366  Q
    |||||||| |||||    
T  18200779 tttggatgcttaac 18200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 2768531 - 2768635
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgatta 324  Q
    ||||||| |||||||||  ||||| ||||||||||||| |||| ||||||||||||||||||| ||||| || |||||| |||| || || ||| ||||     
T  2768531 gtcttgctaatcagtattctcaggatattggttaaggattctacaaataaaaattttgtcttggaaatataaaatgttagttttaattaaataatgattg 2768630  T
Q  325 cacaa 329  Q
    |||||    
T  2768631 cacaa 2768635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 3347509 - 3347585
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| || ||||||  |||||||||    
T  3347509 tggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttacttttaataaagtaataattacacaa 3347585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 6270150 - 6270223
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| || |||||||||||||||| ||||| ||| ||||| ||||||| |||||| ||||||||||    
T  6270150 gttaaggaatctacaattaaaaattttgtcttggaaatataaggtgtta-ttttgataaagtaatgattacacaa 6270223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 33621478 - 33621416
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||||||| ||||||||||||||||||  ||||| || || ||||||||||||||||||    
T  33621478 ttaaggaatctacaaataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaa 33621416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 600484 - 600411
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||||| |||||||  ||||| |||| ||||| ||||||||||||||||| |||||| |||| |||||    
T  600484 ttaaggaatctacaaataaattttttggcttggaaatataagatgttacttttgataaagtaatgattgcacaa 600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 35901414 - 35901531
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||  |||||||||||||| || || ||| |||| |||||         |||||||||||| |    
T  35901414 tggttaaggaatctacaaatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttacttgt 35901513  T
Q  353 tttggatgtttaaccaat 370  Q
    |||||||| |||||||||    
T  35901514 tttggatgcttaaccaat 35901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 37561493 - 37561562
Alignment:
Q  249 gtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||| |||| |||||||| ||||||| | ||| ||||| ||||| ||||||||||||||||||    
T  37561493 gtattggttaaagaatttataaatagaaattttattttgaaaatataagattttacttttgatcaagtaa 37561562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 18045398 - 18045322
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||| ||||||| || |||||||||||||||| ||||| || |||||||||||| ||| ||||  |||||||||    
T  18045398 tggttaaagaatctacaactaaaaattttgtcttgaaaatataatatgttacttttgttcatgtaataattacacaa 18045322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 42361500 - 42361588
Alignment:
Q  241 tcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||| ||||||| |||||||| |||| ||||||||||||  ||||| ||||||||  |||| || |||||| |||| |||||    
T  42361500 tcttcagggtaatggttaaagaatctattaatagaaattttgtctttgaaatataagatgttcttttttataaagtaaagattgcacaa 42361588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 13873809 - 13873742
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgatt 323  Q
    ||||||||||||||||||||| |||||||||  ||||| ||||||||| |||| || |||||| ||||    
T  13873809 ttaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgatt 13873742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 4989810 - 4989737
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    |||||||| || ||||||||||||| ||||||||| ||||| ||| | | | ||||||||||||||| ||||||    
T  4989810 tggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattaca 4989737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 40489964 - 40489892
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||||||||||||| || ||||||||||| |||| ||||| || |||||||| ||||| |||||| |||||||    
T  40489964 tggttaaggaatctacaa-taaaaattttgccttgtaaatataaaatgttactattgataaagtaatgattaca 40489892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 12201891 - 12201843
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    ||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  12201891 aaatagaaattttgtcttggaaatataagctgttacttttgatcaagta 12201843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 12446319 - 12446271
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    ||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  12446319 aaatagaaattttgtcttggaaatataagctgttacttttgatcaagta 12446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 31331118 - 31331055
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaa 314  Q
    |||| ||||||| |||| ||||| ||||||| ||||  ||||| ||||||||||||||||||||    
T  31331118 attgcttaaggattctacaaatagaaattttatcttcgaaatataagatgttacttttgatcaa 31331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 44947452 - 44947398
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    ||||||||||||||||||| |||||| ||||| || |||||||||||||| |||||    
T  44947452 aatctataaataaaaattt-gtcttgaaaatataaaatgttacttttgataaagta 44947398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 25250399 - 25250345
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgatt 323  Q
    ||||| ||||||||||||| ||||| || |||||| |||||||||||||| ||||    
T  25250399 aaatagaaattttgtcttgaaaatataatatgttatttttgatcaagtaatgatt 25250345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 23425259 - 23425341
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaag----atgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||| |||| |||||||||||||||||||   ||||| |||    |||||| |||||||||| ||| ||||||||||    
T  23425259 attggttaagaaatccataaataaaaattttgtctcaaaaatataagataaatgttatttttgatcaaataatgattacacaa 23425341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 23725710 - 23725763
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcat 393  Q
    ||||||||||| ||||||||| ||||||||||| ||  || |||||||||||||    
T  23725710 aaaacttacttgttttggatgcttaaccaatgccctgggggcactggttagcat 23725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 600588 - 600528
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||  |||||||||| ||||| | ||||||||||||||| |||||| |||| |||||    
T  600588 aaataaattttttgtcttggaaatataggatgttacttttgataaagtaatgattgcacaa 600528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 34678218 - 34678270
Alignment:
Q  266 tataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||| ||| ||||||||| ||||  || |||||||||||||||||||||    
T  34678218 tataaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaa 34678270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 32134159 - 32134015
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattt 354  Q
    ||||||||||||| ||||| ||||||||| |||  |||| ||||||||| |||| ||||||||| ||||||||||        | |||||||||||||||    
T  32134159 gttaaggaatctacaaatagaaattttgttttgagaatataagatgttattttttatcaagtaatgattacacaactttttcaagaaaacttacttattt 32134060  T
Q  355 tggatgtttaaccaatgctcttaggacactggttagcattcttct 399  Q
    | |||| ||||||||||| |||||| |||| ||||||||||||||    
T  32134059 tagatgcttaaccaatgcccttagggcactagttagcattcttct 32134015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 5611129 - 5611270
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattt 354  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||| |||  |||| ||||         |||||||||||| |||    
T  5611129 gttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttt 5611228  T
Q  355 tggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||||||||||||| |  ||| || |||||||||||||||    
T  5611229 tggatgtttaaccaatacctttatgatactggttagcattct 5611270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 19320272 - 19320345
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||||| |||||||  |||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  19320272 ttaaggaatctacaaataaattttttgtcttgcaaatataaaatgttacttttgataaagtaacgattacacaa 19320345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 17345837 - 17345913
Alignment:
Q  250 tattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||| |||||||||| | ||||||||||||||| ||  ||||| || |||||||||||||||||||| ||||||||    
T  17345837 tattgattaaggaatcaacaaataaaaattttgttttaaaaatataaaatgttacttttgatcaagtagcgattaca 17345913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 17453943 - 17454046
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgatta 324  Q
    ||||||| || ||||  |||||||| ||||||||| || | ||||||| |||||||| | ||| ||||| ||||||||||||||||||| ||||  ||||    
T  17453943 gtcttgctaaccagtgccttcagggcattggttaacgattttataaatgaaaattttattttgaaaatataagatgttacttttgatcacgtaataatta 17454042  T
Q  325 caca 328  Q
    ||||    
T  17454043 caca 17454046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 227450 - 227392
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    ||||||||||||||||||||| ||||||| | ||| ||||| |||||||||||||||||    
T  227450 tggttaaggaatctataaatagaaatttttttttgaaaatataagatgttacttttgat 227392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 31223223 - 31223167
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||||| ||||||||||||||||||||| ||| |  ||| ||||||||||||    
T  31223223 aaaacttacttgttttggatgtttaaccaatgcccttggagcaccggttagcattct 31223167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 31223301 - 31223253
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagat 299  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  31223301 attggttaatgaatctacaaataaaaattttgtcttggaaatataagat 31223253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 17834946 - 17835039
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||| || ||||| | || ||| |||||||||||| |||| |||||  ||| |||||||  ||||| ||||| ||||||||||| ||||||    
T  17834946 gtcttgctaaccagtaccctcggggcattggttaaggattctacaaatagcaatattgtctttgaaatataagatattacttttgattaagtaa 17835039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 2613359 - 2613415
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||| ||||||| ||||||||||||  ||||| ||| || |||||||||||||||||    
T  2613359 aatccataaatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaa 2613415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 120784 - 120643
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| ||||||| ||||||| | ||||||||||| |||||         ||||||||||||||    
T  120784 tggttaaggaatctacaaatagaaattttgtcttgaaaatataagatgtcacttttggtaaagtaacgattgcacaacttttccacaaaaacttacttat 120685  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    |||||||||||||||| |   ||||| |||||||||| ||||    
T  120684 tttggatgtttaaccattatccttagaacactggttaacatt 120643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 27284196 - 27284068
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| | ||||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||| ||| |||| |||||         |||||    
T  27284196 tcagggcaatggttaaggaatctacatatagaaattttgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaa 27284097  T
Q  344 cttacttattttggatgtttaaccaatgc 372  Q
    |||| ||||||||||||||||||||||||    
T  27284096 cttatttattttggatgtttaaccaatgc 27284068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 401
Target Start/End: Complemental strand, 12095071 - 12094925
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattt 354  Q
    ||||||||||||| ||||| ||||||||  ||| ||||| ||||| ||||||||||| |||||| ||||||||||         ||||||||||||||||    
T  12095071 gttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttacttattt 12094972  T
Q  355 tggatgtttaaccaatgctcttaggacactggttagcattcttctaa 401  Q
    ||||||||||| || || |||| |  || ||||||||||||| ||||    
T  12094971 tggatgtttaaacattgttcttcgagcattggttagcattctcctaa 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 31861417 - 31861502
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||| ||||||||| || | ||||||||||| | ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  31861417 tcagggtattgattaaggaatttacatataaaaattttattttggaaatataagatgttacttttgatcaagtaatgattacacaa 31861502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 12076398 - 12076502
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgatta 324  Q
    ||||||| |||||||  | ||| |||| ||||||||||||||  ||||||||||||||||||| ||||| ||||||||| ||||||||||| || ||| |    
T  12076398 gtcttgctaatcagttccctcaaggtaatggttaaggaatcttcaaataaaaattttgtcttgaaaatataagatgttaattttgatcaagcaatgatca 12076497  T
Q  325 cacaa 329  Q
    |||||    
T  12076498 cacaa 12076502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 31089487 - 31089572
Alignment:
Q  226 tcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    |||||| ||||||| || |||||| | || ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  31089487 tcttgctaatcagtgtcctcagggcaatgattaaggaatctataaataaaaattttgtctaaaaaatataagatgttacttttgat 31089572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 22019721 - 22019642
Alignment:
Q  250 tattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||||||||||||| |||||||||||||  ||||| ||||||||| |||  || |||||| ||||||||||    
T  22019721 tattggttaaggaatctataaatgaaaattttgtctttaaaatataagatgttattttctattaagtaatgattacacaa 22019642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 2824804 - 2824890
Alignment:
Q  244 tcagggtatt-ggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||| ||||||||| |||| |||||  | ||||||||||  |||| |||||||||||||||||||||||| ||||||||||    
T  2824804 tcagggtatttggttaaggattctacaaatagcacttttgtcttgggaatataagatgttacttttgatcaagtaatgattacacaa 2824890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 16341100 - 16341218
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    |||||||||||| || |||||||| |||||||||  ||||| || |||||||||||||| |||||| ||||||| ||         ||||| ||| ||||    
T  16341100 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatttat 16341199  T
Q  353 tttggatgtttaaccaatg 371  Q
    |||||||||||||||||||    
T  16341200 tttggatgtttaaccaatg 16341218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 2565412 - 2565485
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||||||||||| ||||||| ||||| ||| | || ||||||||||||||||||||| ||||||||||    
T  2565412 ttaaagaatctataaatataaattttatcttgaaaacataaaatgttacttttgatcaagtaatgattacacaa 2565485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 371
Target Start/End: Complemental strand, 20775192 - 20775069
Alignment:
Q  248 ggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaactta 347  Q
    |||| ||||||| ||||||||||||||||| ||||||||  ||||| ||||| ||| |||||||||| |||  |||||| ||         |||||||||    
T  20775192 ggtaatggttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaactta 20775093  T
Q  348 cttattttggatgtttaaccaatg 371  Q
    ||| ||||||||| ||||||||||    
T  20775092 cttgttttggatgcttaaccaatg 20775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 13967958 - 13967884
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| ||||| |||||||||||||  |||| ||||||||| |||| ||||||||| ||||| ||||    
T  13967958 gttaaggaatctacaaatagaaattttgtcttggtaatataagatgttattttttatcaagtaatgattatacaa 13967884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 31089767 - 31089858
Alignment:
Q  237 agtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||| |||||| | || ||||||||||||  |||| ||||||||||| | ||||| || |||||||||||||| |||||| ||||||||||    
T  31089767 agtatcctcagggcaatgattaaggaatctaccaatagaaattttgtctaggaaatataa-atgttacttttgataaagtaatgattacacaa 31089858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 396
Target Start/End: Original strand, 52837234 - 52837408
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgt---tacttttgatcaagtaacga 321  Q
    ||||||| |||| || ||||||||  | |||||||||||| |||||||| ||||||| ||||| | ||| || ||||   |||||||||||| ||||  |    
T  52837234 gtcttgctaatcggtgtcttcaggacaatggttaaggaatttataaatagaaattttatcttggacatataaaatgttactacttttgatcacgtaatta 52837333  T
Q  322 ttacacaannnnnnnnaaaaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||         ||||| || ||| ||||||||| ||||||||||| ||||||| | ||| |||||||||    
T  52837334 ttacacaactttttcataaaaattttcttgttttggatgcttaaccaatgcccttaggatattggatagcattct 52837408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 22611884 - 22611967
Alignment:
Q  242 cttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattac 325  Q
    ||||||| || || ||||| |||||| ||||| ||||||||||||  ||||| ||||||||||||| ||| |||||| ||||||    
T  22611884 cttcaggataatgattaagaaatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattac 22611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 32543978 - 32544052
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||||||||||||||||||||||||| ||||||  | ||||| || || ||||||||||||| |||| |||||||    
T  32543978 attggttaaggaatctataaataaaaaatttgtcgagaaaatataa-attttacttttgatcaggtaatgattaca 32544052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 44190328 - 44190269
Alignment:
Q  259 aggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||| || ||||| ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  44190328 aggaatatacaaatataaattttatcttgaaaatataagatgttacttttgatcaagtaa 44190269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 42595184 - 42595258
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| |||||||| |||| ||| ||||| ||| ||||| || |||||||||||||| |||||| ||||||||||    
T  42595184 gttaaagaatctatgaatataaaatttgttttgaaaatataaaatgttacttttgataaagtaatgattacacaa 42595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 45921332 - 45921413
Alignment:
Q  248 ggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||||||||||||||||||| ||| ||||||||| ||||| ||| | | ||| ||||| ||||||  |||||||||    
T  45921332 ggtaatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacacaa 45921413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 7437843 - 7437903
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||| | ||||||| ||||| |||||||||||||||| ||||| | ||||||||||    
T  7437843 aaataaaaaatgtgtcttggaaatataagatgttacttttgaacaagtcatgattacacaa 7437903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 55090902 - 55090819
Alignment:
Q  246 agggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||||||||||| |||||||| |||| ||||||||| ||||| ||| | | ||||||||| |||| |  |||||||||    
T  55090902 agggcattggttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacacaa 55090819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 31991456 - 31991530
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacac 327  Q
    ||||||||||||| | || |||||||||||  ||| ||||| ||||||||| ||||||| ||||||  |||||||    
T  31991456 tggttaaggaatccacaattaaaaattttgctttgaaaatataagatgttatttttgataaagtaataattacac 31991530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 37183155 - 37183077
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||||| | || |||||||||| || ||||  ||||| || |||||| |||||||||||||| ||||||||||    
T  37183155 attgattaaggattataaaaataaaaatcttatcttataaatataatatgttatttttgatcaagtaatgattacacaa 37183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 39810731 - 39810777
Alignment:
Q  283 tcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||||||    
T  39810731 tcttgaaaatataagatgttacttttgatcaagtaataattacacaa 39810777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 4482197 - 4482132
Alignment:
Q  251 attggttaaggaatctataaataaaaa-ttttgtcttgcaaataaaagatgttacttttgatcaag 315  Q
    |||| ||||||| |||||||||||||| |||||||||| ||||  ||||| |||||||||| ||||    
T  4482197 attgattaaggattctataaataaaaatttttgtcttgtaaatgcaagatattacttttgaccaag 4482132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 19480760 - 19480711
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaata 293  Q
    |||||| | ||||||| |||| |||||||||||||||||||||| |||||    
T  19480760 tcagggcaatggttaaagaatttataaataaaaattttgtcttgaaaata 19480711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 48419197 - 48419112
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||| | ||||||||||||||| ||||| ||||||||| ||| ||||  || |  ||||||||||| |||||| |||| |||||    
T  48419197 tcagggcagtggttaaggaatctacaaatagaaattttgttttggaaatgtaaaactttacttttgataaagtaatgattgcacaa 48419112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 53142896 - 53142831
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||| ||||||||||||| |||||| || ||||| ||| | | ||||||||| ||||||    
T  53142896 tggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaa 53142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 19480616 - 19480576
Alignment:
Q  289 aaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| ||||||||||||||||| |||||| ||||||||||    
T  19480616 aaatataagatgttacttttgataaagtaatgattacacaa 19480576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 41142290 - 41142350
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgat 311  Q
    ||||||||||||||  || |||||||||||||||||| ||| | ||| | |||||||||||    
T  41142290 attggttaaggaattcatgaataaaaattttgtcttgaaaaaataaggtcttacttttgat 41142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 245 - 394
Target Start/End: Original strand, 30840588 - 30840736
Alignment:
Q  245 cagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaac 344  Q
    |||| ||||||||||||||||||  || | ||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||          |||||    
T  30840588 caggatattggttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacttttttt-gaaaac 30840686  T
Q  345 ttacttattttggatgtttaaccaatgctcttaggacactggttagcatt 394  Q
    |||||| ||||||||| |||| ||||||  ||||||||||||||| ||||    
T  30840687 ttacttgttttggatgcttaatcaatgcctttaggacactggttaacatt 30840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 30293817 - 30293894
Alignment:
Q  249 gtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||||||||| ||||||| ||||| ||||||||||||  ||||| |||||||||||||||||||||||| |||||||    
T  30293817 gtattggttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 11816026 - 11815951
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    ||||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  11816026 tggttaatgaatctaaaaatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacaca 11815951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 41645149 - 41645071
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||| ||||||||||||||||||||||||| | ||||| ||||| ||| |||| ||||||||| ||||||||||    
T  41645149 attggttaaagaatctataaataaaaattttgtctagaaaatataagatattattttttatcaagtaatgattacacaa 41645071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 22294099 - 22293956
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| ||||| ||  |||||||||| |||  ||| |||||         |||||||||||| |    
T  22294099 tggttaaggaatctacaaatagaaattttgtcttggaaatataagatattggttttgatcaaataattattgcacaactttttcataaaaacttacttgt 22294000  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||| ||||||||||||| | |||  | ||||||||||||||||    
T  22293999 tttgaatgtttaaccaatacccttgtggcactggttagcattct 22293956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 36482183 - 36482090
Alignment:
Q  236 cagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||| || || ||||||| ||||||| ||||| ||||||||| ||| ||||| |||||||||||||||||||| ||| | ||||||||    
T  36482183 cagtgtcttccggttaatggttaatgaatctacaaatagaaattttgttttgaaaatataagatgttacttttgatcaaataatgtttacacaa 36482090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 41175412 - 41175468
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||    
T  41175412 aaaacttacttaatttggatgtttaaccaatattcttgggacactggttagcattct 41175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 18242552 - 18242479
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    ||||||||||||| || || ||||||||||||| ||||| ||||||  |||||||||| ||||| |||||||||    
T  18242552 gttaaggaatctacaagtagaaattttgtcttgaaaatataagatgcgacttttgatctagtaatgattacaca 18242479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 8151793 - 8151857
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    |||||||||||| ||||| || ||||||||| ||| ||||| |||||||||||||| ||||||||    
T  8151793 tggttaaggaatttataagtagaaattttgttttgaaaatataagatgttacttttaatcaagta 8151857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 27544700 - 27544628
Alignment:
Q  257 taaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||| ||||| ||||||| ||||| ||||| ||||||||| |||| |||| |||| ||||||||||    
T  27544700 taaggaatctacaaatagaaattttatcttgaaaatataagatgttattttttatcatgtaatgattacacaa 27544628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 1920738 - 1920801
Alignment:
Q  247 gggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttga 310  Q
    |||||||||||||| ||||||| |||| ||||||||||||  ||||| ||| ||||||||||||    
T  1920738 gggtattggttaagaaatctatgaatagaaattttgtcttagaaatataaggtgttacttttga 1920801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 3360673 - 3360736
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaa 314  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||| |||   ||||||||||||||    
T  3360673 attggttaaggaatccataaataaaaattttgtgttggaaatataaggaattacttttgatcaa 3360736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 15139168 - 15139233
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||| ||||||||||||| ||||||||| ||||| ||||| | | ||||||| ||||||    
T  15139168 tggttaaggaaactataaataaaaaatttgtcttgaaaatataagatttgatttttgattaagtaa 15139233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 21052618 - 21052691
Alignment:
Q  245 cagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||||||||||||||| ||||||||||| ||   ||||||||||| ||  ||| |||||| |||||||||    
T  21052618 cagggtattggttaaggaatttataaataaaatttccatcttgcaaatataaactgtcactttttatcaagtaa 21052691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 2611146 - 2611212
Alignment:
Q  253 tggttaaggaatctataaataaaaattt-tgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||||||||||||| |||||| ||||||| ||||| ||| ||| |||||| || ||||||    
T  2611146 tggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaa 2611212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 14044682 - 14044754
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| |||||||  |||| ||||| ||||| ||||| ||||||||||||||||||  |||||||||    
T  14044682 gttaaggaatctacaaataaatttttt-tcttg-aaatataagatattacttttgatcaagtaattattacacaa 14044754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 34346997 - 34346951
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagat 299  Q
    ||||||||||||||| ||||||||| ||||||||| ||||| |||||    
T  34346997 tggttaaggaatctacaaataaaaaatttgtcttgaaaatataagat 34346951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 2089133 - 2089190
Alignment:
Q  272 taaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| |||||||||| ||||| ||||| |||||||||||||| |||  |||||||||    
T  2089133 taaaatttttgtcttggaaatataagattttacttttgatcaaataattattacacaa 2089190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 6102943 - 6102878
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||||||||||||| ||| ||||||||  ||||| ||| | | ||||||||| ||||||    
T  6102943 tggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaa 6102878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 1637946 - 1638014
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaata 293  Q
    ||||||| || ||||||||| |||| | ||||||| || ||||| |||| ||||||||||||| |||||    
T  1637946 gtcttgctaaccagtatcttaagggcaatggttaatgattctattaatataaattttgtcttggaaata 1638014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 11676732 - 11676865
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttactt 350  Q
    |||| |||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||| ||| ||| ||||||          ||||||| |||    
T  11676732 attgattaaggaatctacaaatataaattttgtcttgaaaataaaagacgttacttttgatcaaataatgataacacaattttttcttgaaaacttgctt 11676831  T
Q  351 attttggatgtttaaccaatgctcttaggacact 384  Q
     ||||||||||||||||||||| ||||| |||||    
T  11676832 gttttggatgtttaaccaatgcccttagaacact 11676865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 396
Target Start/End: Complemental strand, 48338937 - 48338785
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| ||||||||| |||| |||||||| ||||||| ||||| ||||| ||||||||| ||||||| ||||||  |||||||||         |||||    
T  48338937 tcagggaattggttaaagaatttataaatagaaattttatcttggaaatataagatgttatttttgataaagtaattattacacaacttttttataaaaa 48338838  T
Q  344 cttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||| ||||||||| ||||||| ||| |||||  |||| |||||||||||    
T  48338837 cttacttgttttggatgcttaaccattgcccttagagcactagttagcattct 48338785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 38359162 - 38359090
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattac 325  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||||||| ||||||| |||||||||||||    
T  38359162 tggttaaggaatctataaataaaaattttatcttagaaatataagatgttaattttgataaagtaacgattac 38359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 6785783 - 6785867
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacaca 328  Q
    |||||| | |||||||||| |||| ||||| || |||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  6785783 tcagggcaatggttaaggattctacaaatagaatttttgtcttgaaaatataaaatgttacttttgatcaagtaatgattacaca 6785867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 28709555 - 28709687
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| | ||||||| ||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||| ||| ||||| ||||         | |||    
T  28709555 tcagggcaatggttaaagaatctataaatagaaattttatcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttttatagaaa 28709654  T
Q  344 cttacttattttggatgtttaaccaatgctctt 376  Q
    ||||||||||||| ||| ||||||||| |||||    
T  28709655 cttacttattttgaatgcttaaccaatactctt 28709687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 44698333 - 44698257
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| |||||| ||||| ||||||||||||| ||||| ||||||||||||||||| || ||| ||||||||||    
T  44698333 tggttaagaaatctacaaatagaaattttgtcttgaaaatataagatgttacttttgataaaataatgattacacaa 44698257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 55446839 - 55446771
Alignment:
Q  261 gaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||| ||||||||||||||||||| ||||| |||||||||||||| || |||||| ||||||||||    
T  55446839 gaatctacaaataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaa 55446771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 1711922 - 1712065
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    ||||||||||||||| || || ||||||||||||| ||||| |||||||||| |||||  ||||||  |||| || |         ||||| ||||||||    
T  1711922 tggttaaggaatctaaaattataaattttgtcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttacttat 1712021  T
Q  353 tttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||| | |||||||||||| | ||||| |||||||||||||||||    
T  1712022 tttagttgtttaaccaatacccttagtacactggttagcattct 1712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 29032525 - 29032451
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| |||| ||| | ||||||||||||  ||||| |||||||||||||||||||||||| ||||||||||    
T  29032525 gttaaggattctacaaacagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaa 29032451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 25958060 - 25958133
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| |||||| | ||||||| ||||||||  ||||| ||||||||||||||||| |||||||||||||||||    
T  25958060 ttaagaaatctacatataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacacaa 25958133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 635703 - 635779
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||||| ||||| ||||||||||||| | | | ||||||||||||||||| || ||| ||||||||||    
T  635703 tggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgattacacaa 635779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 4020213 - 4020137
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| || |||||| ||||||| ||||||  |||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaa 4020137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 49261895 - 49261819
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| ||| || ||||| ||||||||||||| ||||| |||||||||||||||||  |||||  |||||||||    
T  49261895 tggttaagaaatatacaaatagaaattttgtcttgtaaatataagatgttacttttgatagagtaataattacacaa 49261819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 25319617 - 25319578
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgt 283  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  25319617 tcagagtattggttaaggaatctataaataaaaattttgt 25319578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 15671115 - 15671180
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||||||||||||||||||| |||||||||  ||||| ||  ||| |||||| |||||||||    
T  15671115 tggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaa 15671180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 40460346 - 40460218
Alignment:
Q  249 gtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatg-ttacttttgatcaagtaacgattacacaannnnnnnnaaaaaactta 347  Q
    ||||| ||||| ||||||||||||||||||||| | ||| ||||| |||||| ||||||||||| || ||| ||||||| ||          ||||||||    
T  40460346 gtattagttaaagaatctataaataaaaattttattttgaaaatataagatgtttacttttgat-aaataatgattacataatattttcatgaaaactta 40460248  T
Q  348 cttattttggatgtttaaccaatgctctta 377  Q
    ||||||||| ||  ||||||||||||||||    
T  40460247 cttattttgtattcttaaccaatgctctta 40460218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 396
Target Start/End: Original strand, 42437705 - 42437855
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaa 343  Q
    |||||| | |||||||||| |||| ||||| ||||||| ||||| || || ||||||||||||||||||  |||| ||||||| ||         ||||     
T  42437705 tcagggcaatggttaaggattctacaaatagaaattttatcttggaattataagatgttacttttgatc--gtaatgattacataactttttcataaaat 42437802  T
Q  344 cttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
     || | | ||||||||| ||||||||||| ||| || ||||||||||||||||    
T  42437803 tttgcgtgttttggatgcttaaccaatgcccttggggcactggttagcattct 42437855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 31494030 - 31494146
Alignment:
Q  280 ttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattttggatgtttaaccaatgctcttagg 379  Q
    |||||||| ||||| |||| |||| |||| ||||| ||| ||||||||||         |||||||||||| |||||||||||||||| ||  ||  |||    
T  31494030 ttgtcttggaaatataagaagttaattttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaacccatattccaagg 31494129  T
Q  380 acactggttagcattct 396  Q
     ||||||||||||||||    
T  31494130 gcactggttagcattct 31494146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 50958959 - 50958899
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||| ||||||||||||| ||||| || |||||| ||||||||||| || ||||||||||    
T  50958959 aaatagaaattttgtcttggaaatataacatgttatttttgatcaagaaatgattacacaa 50958899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 31069644 - 31069701
Alignment:
Q  339 aaaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    |||||| |||||||||||| || ||||  |||||||||||| || |||||||||||||    
T  31069644 aaaaacgtacttattttggttgcttaattaatgctcttagggcattggttagcattct 31069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 48252269 - 48252326
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttga 310  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||| | | ||||||||    
T  48252269 tggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgacttttga 48252326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 4128778 - 4128834
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||||| ||||||||| ||||||| ||| ||| || ||| ||||||||||||    
T  4128778 aaaacttacttgttttggatgcttaaccattgcccttggggcaccggttagcattct 4128834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 34145920 - 34145968
Alignment:
Q  270 aataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||    
T  34145920 aatataaattttgtgttggaaatataagatgttatttttgatcaagtaa 34145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 15367 - 15481
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttatttt 355  Q
    ||||||||| |||||||| || |||||||||| ||||| |||||||||||||||| ||||||||||||| |||          |||||||||||||||||    
T  15367 ttaaggaatttataaatagaatttttgtcttgaaaatataagatgttacttttgaccaagtaacgattatacacatttttcataaaaacttacttatttt 15466  T
Q  356 ggatgtttaaccaat 370  Q
    | |||||||||||||    
T  15467 gaatgtttaaccaat 15481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 8001736 - 8001821
Alignment:
Q  244 tcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||| | ||||||||||||||| ||||| ||||||| ||||| ||||| ||||||||||||||||| |||||| ||||||||||    
T  8001736 tcagggcaatggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgattacacaa 8001821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 13969099 - 13969240
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttattt 354  Q
    ||||||||||||| ||||| ||||||||||||| ||||| || ||||||||||| || ||||||  |||||||||         |||||||||||| |||    
T  13969099 gttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgttt 13969198  T
Q  355 tggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||| || ||||||||| ||||| || ||||||||| ||||||    
T  13969199 tggttgcttaaccaatactcttggggcactggttaacattct 13969240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 46295841 - 46295934
Alignment:
Q  225 gtcttgcaaatcagtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||| || ||||| |||| ||| | ||||||||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||||||    
T  46295841 gtcttgctaaccagtaccttcggggcaatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaa 46295934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 10226464 - 10226536
Alignment:
Q  257 taaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||||    
T  10226464 taaggaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacacaa 10226536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 372
Target Start/End: Original strand, 33148129 - 33148248
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    |||||||||||| || ||||  ||||||||||||  ||||| |||||| ||||||||||||||||| ||||||||||         |||||||||||| |    
T  33148129 tggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttacttgt 33148228  T
Q  353 tttggatgtttaaccaatgc 372  Q
    |||| ||||||||| |||||    
T  33148229 tttgaatgtttaacaaatgc 33148248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 27688592 - 27688518
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||| |||| |||||||| | ||| ||||| ||||||||||||||||| |||||| ||||||||||    
T  27688592 gttaaggaatctacaaattaaaattttatattgaaaatataagatgttacttttgataaagtaatgattacacaa 27688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 32187165 - 32187108
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatca 313  Q
    ||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  32187165 ttaaggaatttataaatagaaattttgtcttgaaaatataagatgttacttttgatca 32187108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 39238953 - 39238872
Alignment:
Q  246 agggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacac 327  Q
    |||| ||||||||||||||| ||||||||||||||| ||||  ||||  ||| |||||| ||||||||||||| ||||||||    
T  39238953 agggcattggttaaggaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacac 39238872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 26829607 - 26829531
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||| ||| || || || ||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||    
T  26829607 tggttaagaaatttacaattagaaattttgtcttggaaatataagatgttacttttgataaagtaatgattacacaa 26829531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 3529500 - 3529434
Alignment:
Q  238 gtatcttcagggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttact 305  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||||| |||||||||||    
T  3529500 gtatcttcagg-tattggttaaggaatatataaatagaaattttatcttgaaaatataagatgttact 3529434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 30109254 - 30109195
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattcttct 399  Q
    ||||||||||| |||||||||||||| |||||||||| |||||| ||||| |||||||||    
T  30109254 aaaacttacttgttttggatgtttaatcaatgctcttgggacaccggttaacattcttct 30109195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 5069611 - 5069538
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattaca 326  Q
    ||||||| ||||||| | ||||||||||||||||| ||||| ||||| ||| ||||||| |||||| |||||||    
T  5069611 tggttaaagaatctacatataaaaattttgtcttgtaaatataagatattatttttgataaagtaatgattaca 5069538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 12527621 - 12527563
Alignment:
Q  338 aaaaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||||||||||||||||| ||||||||||| ||||| | ||| |||| ||||||    
T  12527621 aaaaaacttacttattttggatgcttaaccaatgcccttagaatactagttatcattct 12527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 52762304 - 52762365
Alignment:
Q  257 taaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||| ||||||||||||||||||||||||| ||||| ||  | | ||||||||||||||||    
T  52762304 taaggtatctataaataaaaattttgtcttgtaaatataaattttaacttttgatcaagtaa 52762365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 26890064 - 26890100
Alignment:
Q  250 tattggttaaggaatctataaataaaaattttgtctt 286  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26890064 tattggttaagaaatctataaataaaaattttgtctt 26890100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 40699365 - 40699289
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||||||||| ||||| |  |||||||||| ||| | ||||| |||||||||||| |||||  |||||||||    
T  40699365 tggttaaggaatctacaaatacattttttgtcttggaaacataagattttacttttgatcgagtaataattacacaa 40699289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 5069820 - 5069761
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttga 310  Q
    |||||||||| || | ||||||| ||||||||||||| ||||| ||| ||||||||||||    
T  5069820 attggttaagaaacccataaatagaaattttgtcttggaaatataaggtgttacttttga 5069761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 39993493 - 39993446
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatg 300  Q
    |||||||| |||||| ||||||||||||||||||| ||||| ||||||    
T  39993493 tggttaagaaatctacaaataaaaattttgtcttgaaaatataagatg 39993446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 9209341 - 9209279
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    ||||||||||||||||||||| |||||| ||| |||||| || | | |||| |||||||||||    
T  9209341 ttaaggaatctataaataaaagttttgttttgaaaataagagttttaacttatgatcaagtaa 9209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 48580013 - 48579935
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||| |||||||||  |||| ||||||||||||  ||||| ||||||| | |||| ||||| ||| ||||||||||    
T  48580013 attggttgaggaatctactaatagaaattttgtcttagaaatataagatgtaatttttaatcaaataatgattacacaa 48579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 38169175 - 38169094
Alignment:
Q  246 agggtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacac 327  Q
    |||| ||||||||||||||| ||| ||| ||  ||| ||||| ||||| ||| ||||||  |||||||||||| ||||||||    
T  38169175 agggcattggttaaggaatccatatatagaagctttatcttgaaaatataagttgttacacttgatcaagtaatgattacac 38169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 47496935 - 47496867
Alignment:
Q  249 gtattggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaa 318  Q
    |||||||||||||||| |||||||| ||||||| ||||  ||||| ||| ||||| ||||||| ||||||    
T  47496935 gtattggttaaggaatttataaatagaaattttatcttaaaaatataagttgtta-ttttgatgaagtaa 47496867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 50015776 - 50015849
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||||||||||  |||||  |||||||||||  ||||| | ||| ||||||||||||||| |||||||| ||||    
T  50015776 ttaaggaatctcaaaataggaattttgtcttaaaaatatatgatattacttttgatcaagcaacgattatacaa 50015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 5069731 - 5069699
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgc 372  Q
    ||||||||||| |||||||||||||||||||||    
T  5069731 aaaacttacttgttttggatgtttaaccaatgc 5069699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 17644838 - 17644894
Alignment:
Q  340 aaaacttacttattttggatgtttaaccaatgctcttaggacactggttagcattct 396  Q
    ||||||||||| ||||||||| ||||||| ||| |  |||||| |||||||||||||    
T  17644838 aaaacttacttgttttggatgcttaaccattgccccaaggacattggttagcattct 17644894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 18786447 - 18786487
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaata 293  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  18786447 tggttaaggaatctataagtaaaacttttgtcttggaaata 18786487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 28108682 - 28108726
Alignment:
Q  249 gtattggttaaggaatctataaataaaaattttgtcttgcaaata 293  Q
    |||||| |||||||||||||||||  ||||||||||||| |||||    
T  28108682 gtattgtttaaggaatctataaatgtaaattttgtcttgaaaata 28108726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 34347227 - 34347271
Alignment:
Q  255 gttaaggaatctataaataaaaattttgtcttgcaaataaaagat 299  Q
    ||||| ||||||||||||| ||||||||||||| ||||| |||||    
T  34347227 gttaaagaatctataaatataaattttgtcttggaaatataagat 34347271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 37597146 - 37597202
Alignment:
Q  269 aaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattac 325  Q
    |||||||||| |||||||| ||||  ||||| ||| |||||||||||||| ||||||    
T  37597146 aaataaaaatattgtcttggaaatgtaagattttatttttgatcaagtaatgattac 37597202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 51761 - 51643
Alignment:
Q  253 tggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaannnnnnnnaaaaaacttacttat 352  Q
    |||||||||||| || |||||||| |||||||||  ||||| || |||||||||||||| |||||| ||||||| ||         ||||| ||| ||||    
T  51761 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatttat 51662  T
Q  353 tttggatgtttaaccaatg 371  Q
    |||||||||||||||||||    
T  51661 tttggatgtttaaccaatg 51643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 3431 - 3376
Alignment:
Q  262 aatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagta 317  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||| |||||    
T  3431 aatctataaataaaaattttgtcttgaaaatataaaatgttacttttgataaagta 3376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 36407 - 36364
Alignment:
Q  346 tacttattttggatgtttaaccaatgctcttaggacactggtta 389  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  36407 tacttattttggatgtttaaccaatgcccttatgacactggtta 36364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 36644 - 36571
Alignment:
Q  256 ttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    |||| ||||||  ||||||||||||||| ||| ||||| ||||||||||||||||| || ||| ||||| ||||    
T  36644 ttaaagaatcttcaaataaaaattttgttttgaaaatataagatgttacttttgattaaataatgattatacaa 36571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 7448 - 7398
Alignment:
Q  279 tttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacacaa 329  Q
    ||||||||| ||||| ||||| |||||||||||||| ||| ||||||||||    
T  7448 tttgtcttgaaaatataagatattacttttgatcaaataatgattacacaa 7398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 28845 - 28921
Alignment:
Q  251 attggttaaggaatctataaataaaaattttgtcttgcaaataaaagatgttacttttgatcaagtaacgattacac 327  Q
    |||| |||||||||||| ||||| ||||||||||||  | ||| || |||||  ||||||| |||||| ||||||||    
T  28845 attgattaaggaatctacaaatagaaattttgtcttatagatataatatgttctttttgataaagtaatgattacac 28921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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