View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10071_low_8 (Length: 349)

Name: NF10071_low_8
Description: NF10071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10071_low_8
NF10071_low_8
[»] chr1 (3 HSPs)
chr1 (179-281)||(52009801-52009903)
chr1 (97-131)||(52010922-52010956)
chr1 (14-50)||(51841490-51841526)
[»] chr7 (5 HSPs)
chr7 (94-131)||(38592966-38593003)
chr7 (14-50)||(8081581-8081617)
chr7 (14-50)||(8082743-8082779)
chr7 (14-50)||(8832481-8832517)
chr7 (14-50)||(12622060-12622096)
[»] chr2 (3 HSPs)
chr2 (142-183)||(5993394-5993435)
chr2 (14-50)||(3117742-3117778)
chr2 (193-229)||(5993361-5993397)
[»] chr8 (1 HSPs)
chr8 (14-50)||(44894897-44894933)
[»] chr5 (1 HSPs)
chr5 (94-146)||(19333525-19333577)
[»] chr4 (1 HSPs)
chr4 (14-50)||(34513519-34513555)
[»] chr3 (1 HSPs)
chr3 (14-50)||(25233348-25233384)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 52009903 - 52009801
Alignment:
Q  179 atctctgtcacccctctcacgacgctcatcgtattctctctgtcttctccaatctccatctctccattcgtctgtcacagctgtttcacataaccctttt 278  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  52009903 atctctgccacccctcccacgacgctcatcgtattctctccgtcttctccaatctccatctctccattcgtccgtcacagttgtttcacataatcctttt 52009804  T
Q  279 gaa 281  Q
    |||    
T  52009803 gaa 52009801  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 52010922 - 52010956
Alignment:
Q  97 caatattagaagctcgcttatttgtagggacctta 131  Q
    |||| ||||||||||||||||||||||||||||||    
T  52010922 caatgttagaagctcgcttatttgtagggacctta 52010956  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 51841490 - 51841526
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  51841490 agcacagtttgacggcaaggaccaaacttacaaacgg 51841526  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 38593003 - 38592966
Alignment:
Q  94 gatcaatattagaagctcgcttatttgtagggacctta 131  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  38593003 gatcaatattaaaagctcacttatttgtagggacctta 38592966  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 8081617 - 8081581
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  8081617 agcacagtttgacggcaaggaccaaacttacaaacgg 8081581  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 8082743 - 8082779
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  8082743 agcacagtttgacggcaaggaccaaacttacaaacgg 8082779  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 8832517 - 8832481
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  8832517 agcacagtttgacggcaaggaccaaacttacaaacgg 8832481  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 12622060 - 12622096
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  12622060 agcacagtttgacggcaaggaccaaacttacaaacgg 12622096  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 5993435 - 5993394
Alignment:
Q  142 accttcactgcatcacgctgccggaacgacgccctccatctc 183  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  5993435 accttccctgcatcacgccgccggcacgacgccctccatctc 5993394  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 3117778 - 3117742
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  3117778 agcacagtttgacggcaaggaccaaacttacaaacgg 3117742  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 5993397 - 5993361
Alignment:
Q  193 tctcacgacgctcatcgtattctctctgtcttctcca 229  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  5993397 tctcaggacactcatcgtattctctctgtcttctcca 5993361  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 44894897 - 44894933
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  44894897 agcacagtttgacggcaaggaccaaacttacaaacgg 44894933  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 19333525 - 19333577
Alignment:
Q  94 gatcaatattagaagctcgcttatttgtagggaccttagatataatcaacctt 146  Q
    ||||||| || | ||||||||||||||||||||||||| | ||||| ||||||    
T  19333525 gatcaatgttggtagctcgcttatttgtagggaccttaaacataattaacctt 19333577  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 34513519 - 34513555
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  34513519 agcacagtttgacggcaaggaccaaacttacaaacgg 34513555  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 25233348 - 25233384
Alignment:
Q  14 agcacagattgacggcaaggaccaaagttacaaacgg 50  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  25233348 agcacagtttgacggcaaggaccaaacttacaaacgg 25233384  T

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