View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10072_2 (Length: 334)
Name: NF10072_2
Description: NF10072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10072_2 |
 | |
|
| [»] chr5 (16 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 41366169 - 41365836
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366169 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
41366070 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366069 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
41365970 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41365969 |
tcctctgccaattttttgaggtggtgatggggcaatgaactcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
41365870 |
T |
|
| Q |
301 |
tgacaatggaattgttagcgctcaatgttttaac |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
41365869 |
tgacaatggagttgttagcgctcaatgttttaac |
41365836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 41322016 - 41321759
Alignment:
| Q |
44 |
atcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaatttctggt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41322016 |
atcagtagcattgtaactaaatattgtagacaaaagaaggtttggcctatcacaaaagttgagatcatgtgttttcataatctctttggcaatttctggt |
41321917 |
T |
|
| Q |
144 |
gaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatggggcaatgaacgcg |
243 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| || |||||||||| |||||||||| |||||||| |||||| | | |||||||||||||| | |
|
|
| T |
41321916 |
gaactaactattacgtatggtacctctcctagtttaaggtgcattagaggtccatatttatctgccaaaattttgaagagatgatggggcaatgatctgc |
41321817 |
T |
|
| Q |
244 |
ttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaatt |
301 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| | | |||||||||| ||||| ||||| |
|
|
| T |
41321816 |
tgataatctgatgtaagtttcctatgaagggtagtttccatggtcctggtggcaaatt |
41321759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 41327976 - 41327682
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||| || | || || ||||||||| || ||||||||||||||| |||| | ||||||||||| |||||||| || ||||| |
|
|
| T |
41327976 |
ttcgtaattgcctccaatgttcaccgtatgcagcgaaggcaatgtctgtagcattgtaactatatatattggacaaaagaaggtttggcctgtcgcagaa |
41327877 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| || |||||||||| ||||||||| |
|
|
| T |
41327876 |
gttgagatcatgtgttttcataatctctttggcaatttctggtgaactaactattacgtatggtacctctcctagtttaaggtgcattagaggtccatat |
41327777 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtgg |
295 |
Q |
| |
|
| |||||||| |||||| | | |||||||||||||| | | ||||||||||||| ||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
41327776 |
ttatctgccaaaattttgaagagatgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtttccatggtcctggtgg |
41327682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 31188882 - 31189198
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||| ||||||||| | |||||||| || ||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||| || |
|
|
| T |
31188882 |
ttcgtagttgcctccagtgttctccatatggagagaagataatatcaatagcattgtaactaaatattgtggacaaaagaaggtttggtctatcacaaaa |
31188981 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||| | |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
31188982 |
gttgaggtcatgtgttttcataatctctttggccattgatggtgaactaactattaggtatgatacctctcctagttttaggtgcattaagggtccatat |
31189081 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
300 |
Q |
| |
|
|| || || ||||||| | ||||| |||||||| | |||| ||||| ||||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
31189082 |
gtatcagctaaatttttgaagcattgatgaggcaatgagttgctaataagttgatgcatgtttcctatgatgggtagtgtccatggtcctggtggtaaat |
31189181 |
T |
|
| Q |
301 |
tgacaatggaattgtta |
317 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
31189182 |
tgatactggaattgtta |
31189198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 41324078 - 41323762
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||| ||||||||| |||||||| | ||||||| || |||||||||||||||| | |||||||| | ||||||||| ||||||||||||| || |
|
|
| T |
41324078 |
ttcgtagttgcctccaccgttctccatatttagagaatataacatcagtagcattgtaagttaatattgtggccaaaagaaggtttggcctatcactaaa |
41323979 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||| ||||||||| |
|
|
| T |
41323978 |
ggtaaggtcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtatggtacctctcctagtttaaggtgcattaaaggtccatat |
41323879 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
300 |
Q |
| |
|
| || ||||| |||||| | |||||||||||||||| | | ||||||||||||| ||||||||||||||| | | ||||||||||||||| || | |
|
|
| T |
41323878 |
ttatcagccaaaattttgaagcggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagttcccatggtccaggtggcaatt |
41323779 |
T |
|
| Q |
301 |
tgacaatggaattgtta |
317 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
41323778 |
tggtagtggaattgtta |
41323762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 31 - 317
Target Start/End: Complemental strand, 41286047 - 41285761
Alignment:
| Q |
31 |
tagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctcttt |
130 |
Q |
| |
|
||||||| |||||||| ||| ||||||| ||| |||||| | ||||||||| |||||||||||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
41286047 |
tagagaatgcaatatctgtattattgtaagtaagtattgtgggcaaaagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctcttt |
41285948 |
T |
|
| Q |
131 |
ggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatgg |
230 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||| |||| |||| |||||| | |||||||||| |||| |||| |||||| | |||||| |
|
|
| T |
41285947 |
ggccatttctggtgaactaactattatgtaaggcacctctcctagttttaagtgcatcagaggtccatatttctcttccaaaattttgaagcaatgatgg |
41285848 |
T |
|
| Q |
231 |
ggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaattgacaatggaattgtta |
317 |
Q |
| |
|
|||| ||| | | ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
41285847 |
ggcagtgagctactaataatatgatgtatatttcctatgaggggcagtgtccatggtccaggtggtaaattgatagtggaactgtta |
41285761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 31185369 - 31185664
Alignment:
| Q |
8 |
ttgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgata |
107 |
Q |
| |
|
||||||||||| |||| ||| ||||||||| |||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| ||||||| |
|
|
| T |
31185369 |
ttgcctccaatgttcttcatatgtagagaaagcaataccagtagcgttgtaactaaatattgtggacaaaagaaagtttggtctatcacaaaagttgagg |
31185468 |
T |
|
| Q |
108 |
tcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||| | |||||| |||| ||||||||||||||||||||||||| || | |
|
|
| T |
31185469 |
tcatgtgttttcataatctctttggccattgatggtgaactaactattaggtatgatacctctcctagttttaggtgcattaagggtccatatttttcag |
31185568 |
T |
|
| Q |
208 |
ccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaattga |
303 |
Q |
| |
|
| || ||||||| | ||||| |||||||| | ||||| ||||||||||||||||||| ||| | ||||| |||||| |||||||||||| |
|
|
| T |
31185569 |
ctaaatttttgaagcactgatgaggcaatgagtttctaataatttgatgtatgtttcctatgatgggtagtgtccgtggtccttgtggtaaattga |
31185664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 41315966 - 41315709
Alignment:
| Q |
44 |
atcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaatttctggt |
143 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41315966 |
atcagtagcattgtaactccatattgtagacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcataatctctttggcaatttctggt |
41315867 |
T |
|
| Q |
144 |
gaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatggggcaatgaacgcg |
243 |
Q |
| |
|
||||||||||||| ||| || ||| | ||||| || |||| ||| ||||||||||||| |||||||| ||| | |||||||||||||||| | |
|
|
| T |
41315866 |
gaactaactattacgtatggcacccctcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgc |
41315767 |
T |
|
| Q |
244 |
ttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaatt |
301 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| | | |||||||||| ||||| ||||| |
|
|
| T |
41315766 |
tgataatctgatgtaagtttcctatgaagggtagtttccatggtcctggtggcaaatt |
41315709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 41331989 - 41331673
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||| ||||||||||| ||| | | ||||| |||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
41331989 |
ttcgtacttgcctccaatgttcacagtatgtagcgaagacaatatttgtagcattgtaactccatattgttgacaaaagaaggtttggcctatcacaaaa |
41331890 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
| | |||||||||||||||| |||||| || |||||||||||||||||||||| || |||||||| |||| || |||||||| || ||||||||| |
|
|
| T |
41331889 |
tgtaaggtcatgtgttttcataacctcttttgccatttctggtgaactaactattacatatggtacctctcctagtttaaggtgcatcaaaggtccatat |
41331790 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
300 |
Q |
| |
|
| |||||||| ||||||| | |||||||||||||||| | | ||||||||||||| ||||||||||||||| | | |||||||||| ||||| || | |
|
|
| T |
41331789 |
ttttctgccaactttttgaagaggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggtagtttccatggtcctggtggcaatt |
41331690 |
T |
|
| Q |
301 |
tgacaatggaattgtta |
317 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
41331689 |
tggtagtggaattgtta |
41331673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 41336918 - 41336602
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||||||| |||||| |||||| | ||||||||| |||||||| ||||||||||| |||||| | ||| ||||||| |||||||||||||| || |
|
|
| T |
41336918 |
ttcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaa |
41336819 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||| || || |||||||| |||| || |||||||| || ||||||||| |
|
|
| T |
41336818 |
tgtgatgtcatgtgttttcataatctcttttgccatttctggtgaactaactactacatatggtacctctcctagtttaaggtgcatcaaaggtccatat |
41336719 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaat |
300 |
Q |
| |
|
| |||||||||||||||| | |||||||||| ||| | ||||||| |||||||||||||||||||| | | |||||||||| ||||| || | |
|
|
| T |
41336718 |
ttttctgccaattttttgaagaggtgatgggggggtgagctgccactaatctggtgtatgtttcctatgaggggtagtttccatggtcctggtggcaatt |
41336619 |
T |
|
| Q |
301 |
tgacaatggaattgtta |
317 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
41336618 |
tggtagtggaattgtta |
41336602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 41359793 - 41359599
Alignment:
| Q |
39 |
gcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaattt |
138 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||| | ||||||||| |||||||| |||| ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
41359793 |
gcaatatctgtattattgtaagtaagtattgtggccaaaagaaggtttggcctgtcaccaaaggtaaggtcatgtgttttcataatctctttggcaattt |
41359694 |
T |
|
| Q |
139 |
ctggtgaactaactattatgtaaggtacc---tcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatgg |
230 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
41359693 |
ctggtggactaactattatgtaaggtacctgatcacctaactttaggtgcattaagagtccatatttctcagccaaattttttaggtggtgatgg |
41359599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 31178844 - 31179150
Alignment:
| Q |
8 |
ttgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgata |
107 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||||||||||||| ||||||| ||| | |||||||||||| || || |||||||| ||||||| |
|
|
| T |
31178844 |
ttgcctccagtgttctccatatggagagaaggcaatatcagtagcgttgtaaccaaaa---gaagacaaaagaaggttcggtctatcacaaaagttgagg |
31178940 |
T |
|
| Q |
108 |
tcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||| | || || ||||| ||||||| ||||||||||||||||| || | |
|
|
| T |
31178941 |
tcatgtgttttcataatctctttggccattgatggtgaactaactattatgtatgacacttctcctaattttaggtacattaagggtccatatttttcag |
31179040 |
T |
|
| Q |
208 |
ccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaattgacaat |
307 |
Q |
| |
|
|||| ||| ||| | ||||| | ||||| | |||| ||||||||||||||||||| ||| | |||||||||||| ||||||||||||| | | |
|
|
| T |
31179041 |
ccaaatttctgaagcactgatgaagtaatgagttactaataacttgatgtatgtttcctatgacgggtagtgtccatggtcctggtggtaaattgatact |
31179140 |
T |
|
| Q |
308 |
ggaattgtta |
317 |
Q |
| |
|
|||||||||| |
|
|
| T |
31179141 |
ggaattgtta |
31179150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 31224931 - 31224612
Alignment:
| Q |
1 |
ttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaa |
100 |
Q |
| |
|
|||||| ||||||||| | |||||||| || |||||| ||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||| || |
|
|
| T |
31224931 |
ttcgtatttgcctccagtgttctccatatgcagagaaaacaatactagtagcattgtaactaaatattgtggacaaaagaaggtttgctctgtcacaaaa |
31224832 |
T |
|
| Q |
101 |
gttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatat |
200 |
Q |
| |
|
||||| || | ||||||||||||||||| ||| ||| ||||||||||||||||| ||| | |||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
31224831 |
gttgaggtcgtttgttttcataatctcttgggccattgatggtgaactaactattaggtatgatacctctcctagttttaagtgcattaagggtccatat |
31224732 |
T |
|
| Q |
201 |
tcctctgccaattttttgaggtggtgatggggcaatgaacgcgtt----ataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggt |
296 |
Q |
| |
|
| || ||||| ||||| | || ||||| |||||| | | ||| ||||| ||||||| ||||||||||| ||| | |||||||||||| |||||| |
|
|
| T |
31224731 |
ttttcagccaaattttttaagtactgatgaggcaat-attgagttgctaataatttgatgtaagtttcctatgatgggtagtgtccatggtcctggtggt |
31224633 |
T |
|
| Q |
297 |
aaattgacaatggaattgtta |
317 |
Q |
| |
|
||||||| | ||||||||||| |
|
|
| T |
31224632 |
aaattgatattggaattgtta |
31224612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 66 - 303
Target Start/End: Complemental strand, 41369510 - 41369273
Alignment:
| Q |
66 |
attgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggta |
165 |
Q |
| |
|
||||| |||| |||||| ||||| |||| ||| ||| ||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| | | || |
|
|
| T |
41369510 |
attgtggacagaagaaggtttggtctattacaaaaggtgagatcatgtgtttttagaatctctttggccatttctggtgaactaactattatgcatgata |
41369411 |
T |
|
| Q |
166 |
cctcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcc |
265 |
Q |
| |
|
||| |||| ||||| ||||||||||||||||||| || |||||| ||||||| | |||||||||| ||| | | ||||| |||||||| ||||| |
|
|
| T |
41369410 |
tctctcctagttttagatgcattaagggtccatatttctttgccaaatttttgaagcaatgatggggcagtgagctactaataatttgatgtatatttcc |
41369311 |
T |
|
| Q |
266 |
tatgaggggcattgtccatggtccaggtggtaaattga |
303 |
Q |
| |
|
| ||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
41369310 |
tgtgaggggcagtgtccatggccctggtggtaaattga |
41369273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 41358758 - 41358668
Alignment:
| Q |
244 |
ttataatctgatgtatgtttcctatgaggggcattgtccatggtccaggtggtaaattgacaatggaattgttagcgctcaatgttttaac |
334 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||| |
|
|
| T |
41358758 |
ttataatctgatgtaagtttcctacaaggggcattgtccatggtccaggtggtaagttgacggtagaattgttagcactcaatgttttaac |
41358668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 41430909 - 41430820
Alignment:
| Q |
34 |
agaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataa |
123 |
Q |
| |
|
|||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
41430909 |
agaatgcaatatttgtatcattgtaagtaaatattgtagacaaaagaaggtttggcctatcacaaaagtttaagtcttgtgttttcataa |
41430820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 17249589 - 17249861
Alignment:
| Q |
20 |
ttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttc |
119 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||||||||||| || ||||||||||| ||| | | |||||||||||| |
|
|
| T |
17249589 |
ttctccatatgtagagaatacaatatcagaagcattgtaagtaaatattgtggacaaaagaaggttaggcctatcacaaaaggtaaggtcatgtgttttc |
17249688 |
T |
|
| Q |
120 |
ataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctgccaattttttga |
219 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| || |||||||| |||| ||||| |||||||||||||||||| |||||||| | |||| |
|
|
| T |
17249689 |
ataatctctttggccattgttggtgaactaactattaggtgtggtacctctcctagttttagcagcattaagggtccatatttatctgccaaaatcttga |
17249788 |
T |
|
| Q |
220 |
ggtggtgatggggcaatgaacgcgttataatctgatgtatgtttcctatgaggggcattgtccatggtccagg |
292 |
Q |
| |
|
|||||||||| | ||| || ||||| ||||||||||||||||| | ||||| ||||||||| |||| |
|
|
| T |
17249789 |
accggtgatggggaagtgaggaagtgataatttgatgtatgtttcctataaagggcaaagtccatggtgcagg |
17249861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University