View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10072_3 (Length: 333)
Name: NF10072_3
Description: NF10072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10072_3 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 30404755 - 30404451
Alignment:
| Q |
24 |
taatgactttagagtgattcacatgcttgatattaaatgatacaattgaaaaaatgaattaatacttcaatggaaacatgaaaagaaccaagtcaaatta |
123 |
Q |
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| T |
30404755 |
taatgactttagagtgattcacatgcttgatattaaatgatacaattgaaaaaatgaattaatatttcaatggaaacatgaaaagaaccaagtcaaatta |
30404656 |
T |
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| Q |
124 |
ttataattata-------------atataaaactaaataacaaaatttgatactatgtacgagcatatagttttcatttggtacgacaacaaggcatgtt |
210 |
Q |
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| T |
30404655 |
ttataattataatttataaactatatataaaactaaataacaaaatgtgatactatgtacgagcatatagttttcatttggtacgacaacaaggcacgtt |
30404556 |
T |
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| Q |
211 |
caaaaggtttgagaaggatgacagtggnnnnnnnnnnnnnnnnnnnngttaaggtagaatgcagattctgatttttaatagagaaatcagaacatattct |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30404555 |
caaaaggtttgagaaggatgacagtggattattattattattatattgttaaggtagaatgcagattctgatttttaatagagaaatcagaacatattct |
30404456 |
T |
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| Q |
311 |
aattg |
315 |
Q |
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||||| |
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| T |
30404455 |
aattg |
30404451 |
T |
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