View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10073_high_3 (Length: 461)

Name: NF10073_high_3
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10073_high_3
NF10073_high_3
[»] chr8 (2 HSPs)
chr8 (19-448)||(1945967-1946398)
chr8 (121-172)||(28566362-28566413)
[»] chr6 (3 HSPs)
chr6 (121-435)||(1161571-1161885)
chr6 (121-172)||(7213115-7213166)
chr6 (131-164)||(35163992-35164025)
[»] chr3 (12 HSPs)
chr3 (131-441)||(47361657-47361966)
chr3 (121-407)||(579587-579881)
chr3 (228-325)||(52662181-52662278)
chr3 (121-172)||(43191239-43191290)
chr3 (137-181)||(52662062-52662106)
chr3 (121-172)||(3422912-3422963)
chr3 (121-172)||(52657156-52657207)
chr3 (51-107)||(46016762-46016818)
chr3 (131-172)||(30272749-30272790)
chr3 (19-103)||(9739019-9739103)
chr3 (376-430)||(52657269-52657323)
chr3 (361-431)||(52662295-52662365)
[»] chr7 (6 HSPs)
chr7 (177-441)||(7477801-7478065)
chr7 (242-420)||(7317125-7317303)
chr7 (121-172)||(11698438-11698489)
chr7 (121-172)||(18261001-18261052)
chr7 (131-172)||(33631091-33631132)
chr7 (121-158)||(7477763-7477800)
[»] chr4 (5 HSPs)
chr4 (131-322)||(51806232-51806427)
chr4 (121-172)||(3937867-3937918)
chr4 (122-172)||(25110109-25110159)
chr4 (121-172)||(45067191-45067242)
chr4 (121-171)||(47159821-47159871)
[»] chr1 (3 HSPs)
chr1 (122-426)||(19176724-19177027)
chr1 (121-208)||(50715625-50715712)
chr1 (131-329)||(8239887-8240084)
[»] chr5 (5 HSPs)
chr5 (121-283)||(36874226-36874375)
chr5 (131-169)||(39044872-39044910)
chr5 (131-181)||(39790080-39790132)
chr5 (255-435)||(10715352-10715531)
chr5 (131-172)||(7280516-7280557)
[»] chr2 (3 HSPs)
chr2 (241-434)||(6839822-6840015)
chr2 (131-171)||(465428-465468)
chr2 (121-178)||(6840076-6840135)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 1945967 - 1946398
Alignment:
Q  19 atacgagggttagtgtcaatgtcgctccaaatcttgtcatttcttcgcttccatacacaccataaagtcatgacaaaagtgagaagttgnnnnnnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  1945967 atacgagggttagtgtcaatgtcgctccaaatcttgtcatttcttcgcttccatacacaccataaagtcatgacaaaagtgagaagttgttttttttttt 1946066  T
Q  119 nn--ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcaca 216  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946067 ttttggtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcaca 1946166  T
Q  217 caacagcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946167 caacagcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgatt 1946266  T
Q  317 aaggagctcctgaaccgattgatgtatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946267 aaggagctcctgaaccgattgatgtatgtcctgaaatcttctggcattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatt 1946366  T
Q  417 tgatgagtaccattgttcccattgcgttgcct 448  Q
    ||||||||||||||||||||||||||||||||    
T  1946367 tgatgagtaccattgttcccattgcgttgcct 1946398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 28566362 - 28566413
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||||||||||||||||| |||||||||| |||| ||||||    
T  28566362 ggtaaatagagataactttcattaaccaacacaattattataaaccacatgg 28566413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 121 - 435
Target Start/End: Complemental strand, 1161885 - 1161571
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaac 220  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1161885 ggtaaatagagataactttcattaaccaaaacagttattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaac 1161786  T
Q  221 agcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaagg 320  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  1161785 aataaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccgctaatgtagacaatcttcttaatttgattaagg 1161686  T
Q  321 agctcctgaaccgattgatgtatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgat 420  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  1161685 agctcctgaaccgattgatgtatgtcctgaaatcttctggcattcctttccttcaaaatcatatattgcgtgatactcaagaccattctactcatttgat 1161586  T
Q  421 gagtaccattgttcc 435  Q
    |||||||||||||||    
T  1161585 gagtaccattgttcc 1161571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 7213115 - 7213166
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || |||| |||||||||| ||||||| ||||||||||||||||||    
T  7213115 ggtaaatagagatatctttcattaatcaaaacagttattacaaactacatgg 7213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 35163992 - 35164025
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaa 164  Q
    ||||||||||||||||||||||| ||||||||||    
T  35163992 gataactttcattaaccaaaacagttattacaaa 35164025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 131 - 441
Target Start/End: Complemental strand, 47361966 - 47361657
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaacagcaaacaaa 230  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||| |||| || ||||||||||||||||||||||| ||| ||||    
T  47361966 gataactttcattaaccaaaacagtcattacaaactacacggcaacaaaaagccacaaaaacaagga-gcaaaagttaatctcacacaacaacaaccaaa 47361868  T
Q  231 agtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctgaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  47361867 agtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacgatcttcttaatttgattaaggagcttctgaa 47361768  T
Q  331 ccgattgatgtatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccatt 430  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  47361767 ccgattaatgtatgtcctgaaatcttctggcattcctttccttccaaatcatatactgcgtgatactcaagacaattctactcatttgatgagtatcatt 47361668  T
Q  431 gttcccattgc 441  Q
    |||||||||||    
T  47361667 gttcccattgc 47361657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 407
Target Start/End: Complemental strand, 579881 - 579587
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaac 220  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  | | |||||||| ||| ||||||||||||| ||     
T  579881 ggtaaatagagataactttcattaaccaaaacaattattacaaactacatgacaacacgaagcctaaca-acaaagaaacaatagttaatctcacaaaaa 579783  T
Q  221 agcaa--acaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttag-------atttcaacccactaatgtaaacaatcttcttaatt 311  Q
    |  ||  ||||||| |||||| ||||||||||| |||||||| |||||  ||||||         ||||||||||||||||||||||||||||  | | |    
T  579782 acaaacaacaaaagccaaaggcctcacaagcttgacattagattcttcgactttttttttattttatttcaacccactaatgtaaacaatctttgtgact 579683  T
Q  312 tgattaaggagctcctgaaccgattgatgtatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccatt 407  Q
    || |||||||| |||||||| ||||| || |||| ||||||||||||  ||||| ||| ||| |||||| |||||||||| |||||||||||||||    
T  579682 tggttaaggagttcctgaactgattggtgaatgtgctgaaatcttctagcattcattttcttacaaatcttatactgcgtaatactcaagaccatt 579587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 52662181 - 52662278
Alignment:
Q  228 aaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctc 325  Q
    |||||||||||  ||| |||||||  |||||| ||||||||||| ||| |||||||||||||||||||||||||||  || | ||| |||||||||||    
T  52662181 aaaagtcaaagacctcgcaagcttctcattaggctcttcatcttcttacatttcaacccactaatgtaaacaatctcttttacttggttaaggagctc 52662278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 43191239 - 43191290
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43191239 ggtaaatagagataactttcattaaccaaaacaattattacaaactacatgg 43191290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 52662062 - 52662106
Alignment:
Q  137 tttcattaaccaaaacaattattacaaactacatggcaacaagaa 181  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  52662062 tttcattaaccaaaacaattattacaaactacatggcatcaagaa 52662106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 3422912 - 3422963
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  3422912 ggtaaatagagataactttcattaaccaaaacagttattacaaactacatgg 3422963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 52657156 - 52657207
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  52657156 ggtaaatagagataaatttcattaaccaaaacaattattacaaactacatgg 52657207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 46016762 - 46016818
Alignment:
Q  51 cttgtcatttcttcgcttccatacacaccataaagtcatgacaaaagtgagaagttg 107  Q
    |||||| ||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  46016762 cttgtcgtttcttcgcttccatatgcaccacaaagtcatgacaaaagtgataagttg 46016818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 30272749 - 30272790
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  30272749 gatatctttcattaaccaaaacagttattacaaactacatgg 30272790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 9739019 - 9739103
Alignment:
Q  19 atacgagggttagtgtcaatgtcgctccaaatcttgtcatttcttcgcttccatacacaccataaagtcatgacaaaagtgagaa 103  Q
    ||||||||| |||||||||| ||| || | | |||||| ||||||| |||||||| | | ||||||||| ||| |||||||||||    
T  9739019 atacgagggctagtgtcaatatcgttctagagcttgtcgtttcttcacttccatatatagcataaagtcgtgataaaagtgagaa 9739103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 52657269 - 52657323
Alignment:
Q  376 aaatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccatt 430  Q
    ||||||||||||| ||   |||||| |||||||||||||| ||||||||||||||    
T  52657269 aaatcatatactgagtttcactcaacaccattctactcatgtgatgagtaccatt 52657323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 52662295 - 52662365
Alignment:
Q  361 cattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccattg 431  Q
    ||||||||| ||||||||| ||||||   || | |||||| | |||||||||||| |||||||||||||||    
T  52662295 cattcctttacttccaaataatataccaagttacactcaacatcattctactcatgtgatgagtaccattg 52662365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 177 - 441
Target Start/End: Original strand, 7477801 - 7478065
Alignment:
Q  177 aagaagccacaaagacaaagaagcaaaagttaatctcacacaacagcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttag 276  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7477801 aagaagctacaaagataaagaagcaaaagttaatctcacacaacaacaaacaaaagtcaaaggtctcataagcttaacattagactcttcatctttttag 7477900  T
Q  277 atttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctgaaccgattgatgtatgtcctgaaatcttctgacattcctttccttcca 376  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  7477901 atttcaacccactaatgtagacaatcttcttaatttgattaaggatctcctgaaccgattgatgtatgttctgaaatcttctggcattcctttccttcca 7478000  T
Q  377 aatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccattgttcccattgc 441  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7478001 aatcatatactgtgtgatactcaagaccattctactcatttgatgagtaccattgttcccattgc 7478065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 7317125 - 7317303
Alignment:
Q  242 tcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctgaaccgattgatgt 341  Q
    |||||| ||||||| |||  |||||||||  |||| |||||| || |||||||| |||||||  || ||||| | ||||||||||||| |  | ||||      
T  7317125 tcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacaatctctttgatttggtgaaggagctcctgagctaactgataa 7317224  T
Q  342 atgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgat 420  Q
    || |  |||||| ||||| |||| ||||| ||||||||||||||||| || | ||||||   ||||||||||| |||||    
T  7317225 attttatgaaatattctggcatttctttctttccaaatcatatactgggttacactcaacgtcattctactcaattgat 7317303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 11698438 - 11698489
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||||||||||||||| ||||||||||||||||||| ||||    
T  11698438 ggtaaatagagataactttcattaaccgaaacaattattacaaactatatgg 11698489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 18261001 - 18261052
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || |||||||||||||||||||||||  |||||||||||||||||    
T  18261001 ggtaaatagagataactttcattaaccaaaacagatattacaaactacatgg 18261052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 33631091 - 33631132
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  33631091 gataactttcattaaccaaaagagttattacaaactacatgg 33631132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 7477763 - 7477800
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattat 158  Q
    |||||| || ||||||||||||||||||||||||||||    
T  7477763 ggtaaatagagataactttcattaaccaaaacaattat 7477800  T

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Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 131 - 322
Target Start/End: Original strand, 51806232 - 51806427
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacat----ggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaacagcaaa 226  Q
    ||||||||||||||||||||||| ||||||||| ||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||     
T  51806232 gataactttcattaaccaaaacagttattacaatctacatacatggcgacaagaagccacaaagacaaagaagcaaaagttaatctcacacaaaaacaat 51806331  T
Q  227 caaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggag 322  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  51806332 caaaagccaaaggcctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatctttttgatttgtttaaggag 51806427  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 3937867 - 3937918
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || |||| |||||||||||||||||| ||||||||||||||||||    
T  3937867 ggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 3937918  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 25110159 - 25110109
Alignment:
Q  122 gtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    ||||| || |||||||||| |||||||||||| ||||||||||||||||||    
T  25110159 gtaaatagagataactttcgttaaccaaaacagttattacaaactacatgg 25110109  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 45067242 - 45067191
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    |||||| || ||||||||||| ||||||||| | ||||||||||||||||||    
T  45067242 ggtaaatagagataactttcactaaccaaaatagttattacaaactacatgg 45067191  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 47159821 - 47159871
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatg 171  Q
    |||||| || ||||| ||||| ||||||||||| |||||||||||||||||    
T  47159821 ggtaaatagagataaatttcactaaccaaaacatttattacaaactacatg 47159871  T

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Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 122 - 426
Target Start/End: Complemental strand, 19177027 - 19176724
Alignment:
Q  122 gtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaaca 221  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||| ||| || ||| |||| || | |    
T  19177027 gtaaagagagatatctttcattaaccaaaacaattattataaactacatggcaacaagaatccaaaaa-actaagaaacaagagctaagctcaaactata 19176929  T
Q  222 gcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttt--tagatttcaacccactaatgtaaacaatcttcttaatttgattaag 319  Q
       || |||||  ||||||||||||| ||||||||||  |||||||||||||  |||||||||| |||| ||||||||| ||||| || ||||| |||||    
T  19176928 c--aagaaaagctaaaggtctcacaatcttaacattaacctcttcatcttttcttagatttcaaaccacaaatgtaaactatctttttgatttggttaag 19176831  T
Q  320 gagctcctgaaccgattgatgtatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttga 419  Q
    |||||| | ||| |||||||| || | |||||||||||| |||||||||||  ||||||||||| | || |||| |||||| |||||||||||||| |||    
T  19176830 gagctcgtaaactgattgatgaatttactgaaatcttctaacattcctttctctccaaatcatacattgagtgacactcaaaaccattctactcatgtga 19176731  T
Q  420 tgagtac 426  Q
    |||||||    
T  19176730 tgagtac 19176724  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 50715625 - 50715712
Alignment:
Q  121 ggtaaagagcgataactttcattaacca-aaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagtta 208  Q
    |||||| || |||||||| ||||||||| |||||| ||||||||||||||||| |||||||| ||||||  |||||||| ||| |||||    
T  50715625 ggtaaaaagagataacttccattaaccataaacaactattacaaactacatggaaacaagaa-ccacaacaacaaagaaacaagagtta 50715712  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 329
Target Start/End: Original strand, 8239887 - 8240084
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaag--acaaagaagcaaaagttaatctcacacaacagcaaaca 228  Q
    ||||||||||||||| ||||||| | ||||||||||| |||||| |||||| ||| |||   | |||||| ||| |||||| || | |||| | |||  |    
T  8239887 gataactttcattaatcaaaacagtcattacaaactaaatggcatcaagaa-ccataaactaataaagaaacaagagttaagcttaaacaaaa-caagaa 8239984  T
Q  229 aaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctg 328  Q
    ||||||| |   ||||||| ||||||||||| || ||||| | | ||| ||| || || ||||||||  |||||||||| ||||| ||||||||||||||    
T  8239985 aaagtcacaac-ctcacaatcttaacattaggctgttcatatgtgtagtttttaaacctctaatgtattcaatcttcttgatttggttaaggagctcctg 8240083  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 283
Target Start/End: Complemental strand, 36874375 - 36874226
Alignment:
Q  121 ggtaaagagcgataactttcattaaccaaaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagttaatctcacacaac 220  Q
    |||||| || || |||||||||||||||||| | |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  36874375 ggtaaatagagaaaactttcattaaccaaaatagttattacaaactacatggcaacaacaaaccacaaagataaagaagcaaaagttaatctcaaacaac 36874276  T
Q  221 agcaaacaaaagtcaaaggtctcacaagcttaacattagactcttcatctttttagatttcaa 283  Q
    | |||||||||||             ||||||||||||||||||||||||||||||| |||||    
T  36874275 aacaaacaaaagt-------------agcttaacattagactcttcatctttttagaattcaa 36874226  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 39044872 - 39044910
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactaca 169  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39044872 gataactttcattaaccaaaacaattattacaaactaca 39044910  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 39790080 - 39790132
Alignment:
Q  131 gataactttcattaacc--aaaacaattattacaaactacatggcaacaagaa 181  Q
    ||||||||||||||| |  |||||||||||||||||||||||| |||||||||    
T  39790080 gataactttcattaaaccaaaaacaattattacaaactacatgacaacaagaa 39790132  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 435
Target Start/End: Complemental strand, 10715531 - 10715352
Alignment:
Q  255 attagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctgaaccgattgatgtatgtcctgaaatc 354  Q
    ||||| |||||||| | ||||| |||||| || |||||||||| |||||  || ||||| |||||| |||||||| | |||| |||  |||  |||||      
T  10715531 attaggctcttcatttgtttagttttcaaacctctaatgtaaataatctctttgatttggttaaggggctcctgagctgattaatgattgttttgaaaga 10715432  T
Q  355 ttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccattgttcc 435  Q
    || | |||  | |||| ||||||||||| || || |||   ||||| |||||| ||||||||||||||||| |||||||||    
T  10715431 ttataacaaacatttc-ttccaaatcatttattgagtgtagctcaaaaccattatactcatttgatgagtatcattgttcc 10715352  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 7280557 - 7280516
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatgg 172  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  7280557 gataacttttattaaccaacacagttattacaaactacatgg 7280516  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 434
Target Start/End: Complemental strand, 6840015 - 6839822
Alignment:
Q  241 ctcacaagcttaacattagactcttcatctttttagatttcaacccactaatgtaaacaatcttcttaatttgattaaggagctcctgaaccgattgatg 340  Q
    ||||||| ||||||| |||  |||||||||  |||| |||||| || |||||||| || ||||  || |||||   ||||||| ||||| | || |||||    
T  6840015 ctcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacgatctctttgatttggcgaaggagcccctgagctgactgatg 6839916  T
Q  341 tatgtcctgaaatcttctgacattcctttccttccaaatcatatactgcgtgatactcaagaccattctactcatttgatgagtaccattgttc 434  Q
     || | ||||||  ||||| |||||||||| ||||||||||||||||| || | ||||||   ||||||||||| |||||| ||| | ||||||    
T  6839915 aattttctgaaaagttctggcattcctttctttccaaatcatatactgggttacactcaacgtcattctactcaattgatgtgtagcgttgttc 6839822  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 465428 - 465468
Alignment:
Q  131 gataactttcattaaccaaaacaattattacaaactacatg 171  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  465428 gataactttcattaaccaaaacaattattacaaactacatg 465468  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 6840135 - 6840076
Alignment:
Q  121 ggtaaagagcgataactttcattaacc--aaaacaattattacaaactacatggcaacaa 178  Q
    |||||| || ||||||||||| ||| |  |||||| ||||||||||||||||||||||||    
T  6840135 ggtaaatagagataactttcaataaaccaaaaacagttattacaaactacatggcaacaa 6840076  T

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