View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_10 (Length: 250)
Name: NF10073_low_10
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 41126580 - 41126820
Alignment:
| Q |
1 |
aacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagt |
100 |
Q |
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| T |
41126580 |
aacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagt |
41126679 |
T |
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| Q |
101 |
gactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126680 |
gactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagcc |
41126779 |
T |
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| Q |
201 |
aaggaaaggagattgagcaaaaacaatgttgtttcctatgc |
241 |
Q |
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| T |
41126780 |
aaggaaaggagattgagcaaaaacaatgttgtttcctatgc |
41126820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 2350577 - 2350767
Alignment:
| Q |
4 |
gagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagtgac |
103 |
Q |
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| T |
2350577 |
gagttaatgatgagaaaatcagtgatattgagcgtgtacaaaggacaattctgttgagtgttaacaaattcaatataataaatttctggccaaaagttac |
2350676 |
T |
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| Q |
104 |
tcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
194 |
Q |
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| T |
2350677 |
tcggattttgttttgcaaacgatgggaagagttgttgaagttacgaaaggatcaagaagatgttttgcttccgctgattagagcgaggaag |
2350767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 2326658 - 2326746
Alignment:
| Q |
106 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
194 |
Q |
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| T |
2326658 |
ggattttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttccgctgataagagggaggaag |
2326746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 2330373 - 2330461
Alignment:
| Q |
106 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
194 |
Q |
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| T |
2330373 |
ggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaag |
2330461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 2303103 - 2303190
Alignment:
| Q |
106 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaa |
193 |
Q |
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| T |
2303103 |
ggattttgttgcgtaaccgatggaaggagtttttgaagttacttaaggatcaagaggatgttctacttccgctgataagagcgaggaa |
2303190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 2320804 - 2320892
Alignment:
| Q |
106 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
194 |
Q |
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| T |
2320804 |
ggattttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaag |
2320892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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