View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_13 (Length: 223)
Name: NF10073_low_13
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_13 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23251493 - 23251715
Alignment:
| Q |
1 |
attccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251493 |
attccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatg |
23251592 |
T |
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| Q |
101 |
taaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251593 |
taaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagc |
23251692 |
T |
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| Q |
201 |
tatgtgtaggggacattagtgcc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
23251693 |
tatgtgtaggggacattagtgcc |
23251715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 23257469 - 23257688
Alignment:
| Q |
3 |
tccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatgta |
102 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23257469 |
tccttttcaatttcaacctatgtatatgcagaatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaaatta |
23257568 |
T |
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| Q |
103 |
aaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagcta |
202 |
Q |
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| T |
23257569 |
aa-ccaaacacattaagtttagaagttccatagtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagcta |
23257667 |
T |
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| Q |
203 |
tgtgtaggggacattagtgcc |
223 |
Q |
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| T |
23257668 |
tgtgtaggggacattagtgcc |
23257688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 23266063 - 23266249
Alignment:
| Q |
36 |
tttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatgtaaaaccaaatcaattaaatttaaaagttccatag |
135 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||| |
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| T |
23266063 |
tttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaa-gttaaaccaaacaaagaaaatttagaagttccatag |
23266161 |
T |
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| Q |
136 |
tgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgcc |
223 |
Q |
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| T |
23266162 |
tgatacctcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatgatactcaaagctatgtgtaggggacattagtgcc |
23266249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23247082 - 23247293
Alignment:
| Q |
1 |
attccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatg |
100 |
Q |
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||||||||| || || ||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||| | |
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| T |
23247082 |
attcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctatcctacaatccaaaaagaaaag |
23247181 |
T |
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| Q |
101 |
taaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagc |
200 |
Q |
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| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||| |
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| T |
23247182 |
t-aaacaaaagacattaaatttaaaagttccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatac---tcatgatactcaaagc |
23247277 |
T |
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| Q |
201 |
tatgtgtaggggacat |
216 |
Q |
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|||||||||| ||||| |
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| T |
23247278 |
tatgtgtaggtgacat |
23247293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 23283160 - 23283284
Alignment:
| Q |
58 |
ttgtagtatagacatttcctattctacaatccaaaaataaatgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaag |
157 |
Q |
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||||||||||||||||| | ||||||||||||||||| ||| ||||||||| | || |||| ||||||||||| |||||||| |||||||||||| |
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| T |
23283160 |
ttgtagtatagacattttcaattctacaatccaaaaaaaaaaacaaaaccaaactcttcaattttagaagttccatagggatacctcttcatcttgaaag |
23283259 |
T |
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| Q |
158 |
tcttgtatatgaatatcttcatact |
182 |
Q |
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||||||| || || || |||||||| |
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| T |
23283260 |
tcttgtaaatcaaaattttcatact |
23283284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 23391074 - 23391146
Alignment:
| Q |
148 |
atcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgcc |
223 |
Q |
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||||||||||||||| | |||||||| |||||| | ||| ||||||| ||||||||||||| |||||||||||| |
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| T |
23391074 |
atcttgaaagtcttgaacatgaatattttcatatt---cattatacccagagctatgtgtaggagacattagtgcc |
23391146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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