View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_2 (Length: 646)
Name: NF10073_low_2
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 39691231 - 39691017
Alignment:
| Q |
9 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
108 |
Q |
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| T |
39691231 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
39691132 |
T |
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| Q |
109 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
208 |
Q |
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| T |
39691131 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
39691032 |
T |
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| Q |
209 |
ctataattaatcaac |
223 |
Q |
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||||||||||||||| |
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| T |
39691031 |
ctataattaatcaac |
39691017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 435 - 628
Target Start/End: Complemental strand, 39690796 - 39690603
Alignment:
| Q |
435 |
tactctttagatgtgtaaaagtgagtgaattaataatgtttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatcc |
534 |
Q |
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| T |
39690796 |
tactctttagatgtgtaagagtgagtgaattaataatgtttgatgagtaagaacatgaaaggaaaaagagagagaccaatgaagaaagggaaacttatcc |
39690697 |
T |
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| Q |
535 |
aaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcactttgtgtg |
628 |
Q |
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| T |
39690696 |
aaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcactttgtgtg |
39690603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 259 - 420
Target Start/End: Complemental strand, 39690981 - 39690820
Alignment:
| Q |
259 |
ttgacatgcttttgatatcaagtgattgagctcaagaatgagctcattgagcaacaaatagttcaggagatcgatctgaattcatattctgacggaaaca |
358 |
Q |
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| T |
39690981 |
ttgacatgctttttatatcaagtgattcagctcaagaatgagctcattgagcgacaaatagttcaggagatcgatctgaattcatattctgacggaaaca |
39690882 |
T |
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| Q |
359 |
atcatcgactaaattttacttgctttttagccaaactctcgattattatatggttaagacac |
420 |
Q |
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| T |
39690881 |
atcatcgactaaattttacttgctttttagccaaactctccattattatatggttaagacac |
39690820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 448 - 620
Target Start/End: Original strand, 39931573 - 39931743
Alignment:
| Q |
448 |
tgtaaaagtgagtgaattaataatgtttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgttt |
547 |
Q |
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| T |
39931573 |
tgtaaaagtgagtgaattaataatgtttgatgagttaaaagatgaaaggaaaaagag--agaccaatgaagaaaggggaacttatccaaccgccacgctt |
39931670 |
T |
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| Q |
548 |
gctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
620 |
Q |
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| T |
39931671 |
gctcccattacttaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
39931743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 486 - 620
Target Start/End: Complemental strand, 39699859 - 39699727
Alignment:
| Q |
486 |
aagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgagg |
585 |
Q |
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| T |
39699859 |
aagatgaaaggaagaagagata--ccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatctgcttcttttgagg |
39699762 |
T |
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| Q |
586 |
atgcttctaccttaccatccattgttgcacttcac |
620 |
Q |
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| T |
39699761 |
atgcttctaccttaccatccattgttgcacttcac |
39699727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 39930986 - 39931190
Alignment:
| Q |
9 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
108 |
Q |
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||||||||||||||| |||| || ||||||||||| ||||||| |||||| || || | |||||||| ||| ||||||||||| ||||| ||| ||| |
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| T |
39930986 |
agaagcaaaggcaacatagaaagaaccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatt |
39931085 |
T |
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| Q |
109 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
208 |
Q |
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|||| |||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||| |
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| T |
39931086 |
tgagttgcagtgatgctctttatattgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatac |
39931185 |
T |
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| Q |
209 |
ctata |
213 |
Q |
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||||| |
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| T |
39931186 |
ctata |
39931190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 39700414 - 39700213
Alignment:
| Q |
15 |
aaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagct |
114 |
Q |
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||||||||| |||| |||||||||||||| |||||||||||||| |||| | ||| |||||| | | |||||||||||||||||||||||| |||||| |
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| T |
39700414 |
aaaggcaacagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagct |
39700315 |
T |
|
| Q |
115 |
gcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataa |
214 |
Q |
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| T |
39700314 |
gcattgatgctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataa |
39700215 |
T |
|
| Q |
215 |
tt |
216 |
Q |
| |
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|| |
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|
| T |
39700214 |
tt |
39700213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 474 - 620
Target Start/End: Original strand, 39936980 - 39937111
Alignment:
| Q |
474 |
ttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgtttgctcccaatactcaagctctcatctg |
573 |
Q |
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||||||||| | |||||||||| ||||||||||| |||||||||||| | ||||||||||||||| ||||| || |||||||| || |
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| T |
39936980 |
ttgatgagttaaaagatgaaagtaaaaagagagaaaccaatgaagaaggggaaacttatccaaccgccacgctt---------------gctctcatgtg |
39937064 |
T |
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| Q |
574 |
cttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
620 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
39937065 |
cttcttttgaggatgctgctagcttaccatccattgttgcacttcac |
39937111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 39935317 - 39935391
Alignment:
| Q |
83 |
tgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatattgaattcacttataagatatacaa |
157 |
Q |
| |
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||||||| | ||||| ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
39935317 |
tgcttccgataacaatgtttacaatctgagcagcaatgatgctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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