View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_4 (Length: 400)
Name: NF10073_low_4
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 8340792 - 8341155
Alignment:
| Q |
19 |
agtttgccatcactaaagatgttgatgatcgacattggttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtatagaaattctgg |
118 |
Q |
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| T |
8340792 |
agtttgccatcactaaagatgttgatgatcgacattggttatgttgaagtatcttctgtgaatgcacttcttgatggctgctcaagtatagaaattctgg |
8340891 |
T |
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| Q |
119 |
atctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttgga |
218 |
Q |
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| T |
8340892 |
atcttggcttttcagcccaaagcttggataaagtttgtgtcccgccttccttgaaaaggttgaaaatcaccattgagaatgatgttggagcttacttgga |
8340991 |
T |
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| Q |
219 |
agtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatctt |
318 |
Q |
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| T |
8340992 |
agtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatctt |
8341091 |
T |
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| Q |
319 |
gatgtctttcccacgtcgcttggttccatcgtccctttgcacaacctctttggcgctctctctg |
382 |
Q |
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| T |
8341092 |
gatgtctttcccacgtcgcttggttccatcgtacctttgcacaacctctttggcgctctctctg |
8341155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 382
Target Start/End: Original strand, 17477811 - 17478100
Alignment:
| Q |
93 |
tggctgctcaagtatagaaattctggatctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccatt |
192 |
Q |
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| T |
17477811 |
tggctgcccaaatatagaatctctgaatcttggcttttctccgcaaagcttagacaaagtttgcatcccacctcccttgaaaaggcttaaaatcaccgta |
17477910 |
T |
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| Q |
193 |
gagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagct |
292 |
Q |
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| T |
17477911 |
gcaaatgttgttggggcttaccttgaaataaatgcaccgaatcttgagtaccttaacattaccggaatcacattcggccaagttttcaccatgtataact |
17478010 |
T |
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| Q |
293 |
tgcccaacgtggtggaagcgtatcttgatgtctttcccacgtcgcttggttccatcgtccctttgcacaacctctttggcgctctctctg |
382 |
Q |
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| T |
17478011 |
tgcacaatgtggtggaagcgtatcttgatgtctttccccaatcgcttggttccgtcgtcgctttacacaatctccttggtgctctctctg |
17478100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 136 - 330
Target Start/End: Complemental strand, 29585551 - 29585354
Alignment:
| Q |
136 |
caaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatg---ttggagcttacttggaagtaaatgcgccgg |
232 |
Q |
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| T |
29585551 |
caaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgatgaagttggggtttaccttgaaataaatgcgcctg |
29585452 |
T |
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| Q |
233 |
atcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttccc |
330 |
Q |
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| T |
29585451 |
atcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttacacaaagtcgtggaagcgtatcttgatgtctttccc |
29585354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 328
Target Start/End: Complemental strand, 4427826 - 4427641
Alignment:
| Q |
143 |
tggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaata |
242 |
Q |
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||||||||||||| ||| | ||||| ||||||||||| | ||||| |||||| ||||| ||||| |||||| | ||| | || || ||||||||| | || |
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| T |
4427826 |
tggataaagtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagta |
4427727 |
T |
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| Q |
243 |
ccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttc |
328 |
Q |
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| T |
4427726 |
cctttacatcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagcacatcttaatgtttttc |
4427641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 24935062 - 24935109
Alignment:
| Q |
164 |
cttccttgaaaaggttaaaaatcaccattgagaatgatgttggagctt |
211 |
Q |
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| T |
24935062 |
cttccttgaagaggttaaaaatcactgttgagaatgatgttggggctt |
24935109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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