View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_7 (Length: 332)
Name: NF10073_low_7
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 14288735 - 14289045
Alignment:
| Q |
19 |
attacgtgaaagggtgtataatataatctcttttagtagtagaggatgtaccataaaacccaaagggtaaaaattgagagcttgtaatgctgttgagtga |
118 |
Q |
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| T |
14288735 |
attacgtgaaagggtgtataatataatatattttagtagtcgaggatgtaccataaaacccaaagggtaaaaattgagagcttgtagtgctgttgagtga |
14288834 |
T |
|
| Q |
119 |
gataaaattttagagaccaccttaaagtttgaagaatgcaatgtaaggat-----------------gattcttccatcttttggagagtatgcaagttt |
201 |
Q |
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| T |
14288835 |
gataaaattttagagaccaccttaaagtttgaagaatacaatgtaaggatgggtaaatgcttccagagattcttccatcttttggagagtatgcaagttt |
14288934 |
T |
|
| Q |
202 |
aaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagcttgtcttcctcgtaatgaagattatgccttct |
301 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||| ||| |
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| T |
14288935 |
gaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcactaagcctgtcttcctcgtaatcattattatg---tct |
14289031 |
T |
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| Q |
302 |
tcttcctctcttgt |
315 |
Q |
| |
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|||||||||||||| |
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| T |
14289032 |
tcttcctctcttgt |
14289045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 45498137 - 45498323
Alignment:
| Q |
129 |
tagagaccaccttaaagtttgaagaatgcaatgtaaggatgattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaag |
228 |
Q |
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| T |
45498137 |
tagagaccaccttaaagtttgaagaatgcaatgtaaggatgattcttccatcttttggagagtatgcaagtttgaacggcgcatttggttttcaaaaaag |
45498236 |
T |
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| Q |
229 |
acataatgtgaagtaaaacgcaatcaggtaaatcaccaagcttgtcttcctcgtaatgaagattatgccttcttcttcctctcttgt |
315 |
Q |
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| T |
45498237 |
acataatgtgaagtaaaacgcaatcaggtaaatcactaagcctgtcttcctcgtaatgaagattatgccttcttcttcctctcttgt |
45498323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 32413696 - 32413601
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
264 |
Q |
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| T |
32413696 |
gattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac |
32413601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 7115552 - 7115647
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
264 |
Q |
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| T |
7115552 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7115647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 7120624 - 7120719
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
264 |
Q |
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| T |
7120624 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7120719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 7124028 - 7124123
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
264 |
Q |
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||||||||||||||||||| | | ||||||| ||| ||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
7124028 |
gattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaaatcac |
7124123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 7140743 - 7140850
Alignment:
| Q |
170 |
attcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagc |
269 |
Q |
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|||||||||||||||||| | || ||||||| ||| ||| |||| || ||||||||||| | |||||||||||||| || || |||||||||| | | |
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| T |
7140743 |
attcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaac |
7140842 |
T |
|
| Q |
270 |
ttgtcttc |
277 |
Q |
| |
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|||||||| |
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| T |
7140843 |
ttgtcttc |
7140850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 8656657 - 8656752
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac |
264 |
Q |
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| T |
8656657 |
gattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcggggaaatcac |
8656752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 8680357 - 8680464
Alignment:
| Q |
170 |
attcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcaccaagc |
269 |
Q |
| |
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|||||||||||||||||| | || ||||||| ||| ||| |||| || ||||||||||| | |||||||||||||| || || | |||||||| | | |
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| T |
8680357 |
attcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaac |
8680456 |
T |
|
| Q |
270 |
ttgtcttc |
277 |
Q |
| |
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|||||||| |
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| T |
8680457 |
ttgtcttc |
8680464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 13492004 - 13491917
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagtttaaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcagg |
256 |
Q |
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||||||||||||| ||| ||||||||||||| ||| || |||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
13492004 |
gattcttccatctcgcggacagtatgcaagtttgaacagcaagtttggtgtccaaaaaagacagaatgtgaagtaaaacgcaatcagg |
13491917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 5362485 - 5362453
Alignment:
| Q |
169 |
gattcttccatcttttggagagtatgcaagttt |
201 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
5362485 |
gattcttccatcgtttggagagtatgcaagttt |
5362453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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