View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10073_low_8 (Length: 308)
Name: NF10073_low_8
Description: NF10073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10073_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 7763390 - 7763654
Alignment:
| Q |
23 |
ctacatagattgggattcagtgactttggtggcggagaaatcattgtgactttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatg |
122 |
Q |
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| T |
7763390 |
ctacatagattgggattcagtgactttggtggcggagaaatcattgtgactttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatg |
7763489 |
T |
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| Q |
123 |
ataaataagacgagagggagataatgcaatataggagagagatagacacaaagtgacagtaatttttctttaaaggtagcggatctgggtccactacgac |
222 |
Q |
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| T |
7763490 |
ataaataagacgagagggagatagtgcaatataggagagagatagacaca-------agtaatttttctttaaaggtagcggatctgggtccactacgac |
7763582 |
T |
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| Q |
223 |
gctatgctaacgaatctgttagtaagttaagttgtatttgtgtgtaacttgtgtttcaagttctaacctttg |
294 |
Q |
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| T |
7763583 |
actatgctaacgaatctgttagtaagttaagttgtatttgtgtgtaacttgtgtttcaagttctaacctttg |
7763654 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 50797099 - 50797004
Alignment:
| Q |
29 |
agattgggattcagtgactttggtggcggagaaatcattgtgactttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatgata |
125 |
Q |
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| T |
50797099 |
agattgggattcaatgactttggtggcggaaaagtcatcgtgactttagtgcaattttatgtattttatgaa-aagaaagatgaaagagaaatgata |
50797004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 51244790 - 51244692
Alignment:
| Q |
69 |
tgactttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatgataaataagacgagagggagataatgcaatataggagagagatag |
167 |
Q |
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| T |
51244790 |
tgactttagtgcaattttgtgtatttaattaaagaaaaagatgaaagagaaacgatagataagacgagagagagggagagtagtataggagagagatag |
51244692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 33829445 - 33829385
Alignment:
| Q |
72 |
ctttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatgataaataaga |
132 |
Q |
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| T |
33829445 |
ctttggtgtatttttatgtatttaatgacagagaaagatgaaagagaaatgatagataaga |
33829385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 43670268 - 43670374
Alignment:
| Q |
30 |
gattgggattcagtgactttggtggcggagaaatcattgtgactttggtgcattttcgtgtatttcatgaatgagaacgatgaaagagaaatgataaata |
129 |
Q |
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| T |
43670268 |
gattgagatttagtgactttggtggcggaaaagtcactt--actttagtgcatttttgtgaattgaatgaaagagaaagataaaagagaaatgatagata |
43670365 |
T |
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| Q |
130 |
agacgagag |
138 |
Q |
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| T |
43670366 |
agatgagag |
43670374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 1113672 - 1113701
Alignment:
| Q |
147 |
tgcaatataggagagagatagacacaaagt |
176 |
Q |
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| T |
1113672 |
tgcaatataggagagagatagacacaaagt |
1113701 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 32791603 - 32791519
Alignment:
| Q |
88 |
tgtatttcatgaatgagaacgatgaaagagaaatgataaataagacgagagggagataatgcaatataggagagagatagacaca |
172 |
Q |
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| T |
32791603 |
tgtattttatgagagagaaagatgaaagagaaatgatggataagacgagagagaaagagagtaatatcagagagagatagacaca |
32791519 |
T |
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