View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_high_10 (Length: 251)
Name: NF10074_high_10
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8472222 - 8471986
Alignment:
| Q |
1 |
aaatgtcagtgttcacccatggtttgtaagatatgtcatttaaccttcatgttttaatttataaatttatttcaggttggtattcgttcaataacaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
8472222 |
aaatgtcagtgttcacccatggtttgtaagatatgtcatttaaccttcatgttttaatttattaatttatttcaggttggtatacgttcaataacaactg |
8472123 |
T |
|
| Q |
101 |
aaggacgcgcacaagcaaaaaa-gtttggcgttgagcaatatgaaatgcgaacattttccagagatcgccacttcctagagaacctggtatgtctctctc |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8472122 |
aaggacgcgcacaagcaaaaaaagtttggcgttgagcaatatgaaatgcgaacattttccagagatcgccacttcctagagaacctggtatgtctctctc |
8472023 |
T |
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| Q |
200 |
tgtctcagtgtgtttgcgtgtacgtgtgtgtatatgc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8472022 |
tgtctcagtgtgtttgcgtgtacgtgtgtgtatatgc |
8471986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 6225168 - 6225370
Alignment:
| Q |
2 |
aatgtcagtgttcacccatggtttgtaagatatgtcatttaaccttcatgttttaatttataaatttatttcaggttggtattcgttcaataacaactga |
101 |
Q |
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||||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||| | |||||||||||| ||||||||| |||||||| |||||| |
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| T |
6225168 |
aatgtcagttttcacccatggtttataagatatgtcatttatctttcatgttttaatttgttaatttatttcagattggtattcattcaataaaaactga |
6225267 |
T |
|
| Q |
102 |
aggacgcgcacaagcaaaaaagtttggcgttgagcaatatgaaatgcgaacattttccagagatcgccacttcctagagaacctggtatgtctctctctg |
201 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6225268 |
aggacgtgtgcaagcgaaaaagtttggcgttgagcaatatgaaatgcgaacgttttccagagatcgccacttcctagagaacctggtatgtctctctctg |
6225367 |
T |
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| Q |
202 |
tct |
204 |
Q |
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||| |
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| T |
6225368 |
tct |
6225370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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