View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_high_11 (Length: 251)
Name: NF10074_high_11
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_11 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 33385601 - 33385835
Alignment:
| Q |
18 |
acatcagaagcacttcagaatggctaaaacagaaagttcacaatcggtgctcgacattggttctcatctcataagtcaagatcaatctttttgaaaa-aa |
116 |
Q |
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| T |
33385601 |
acatcagaagcatttcagaatggctaaaacagaaagttcacaatcgatgctcgacattgattctcatctcataagtcaagatcaatctttttgaaaaaaa |
33385700 |
T |
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| Q |
117 |
taattggaaatcaactgtactaaaggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaatt |
216 |
Q |
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| T |
33385701 |
taattggaaatcaattgtactaaaggttgcagattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttataaagatcataagcaaatt |
33385800 |
T |
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| Q |
217 |
agattgacataaaaagcagagattcaaaaaacacc |
251 |
Q |
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| T |
33385801 |
agaatgacataaaaagcaatgattcaaaaaacacc |
33385835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 17630932 - 17631067
Alignment:
| Q |
78 |
ttctcatctcataagtcaagatcaatctttttgaaaaaataattggaaatcaactgtactaaaggttgctgattaggtagatcataattgcaagtcaaga |
177 |
Q |
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| T |
17630932 |
ttctcatctcataagtcaagatcaacgtttttgaagaaaaaatagaaaatcaagcgtactttaggttatgaattaggtagattagaatattaagtcaaag |
17631031 |
T |
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| Q |
178 |
gatgcaaaagattgaagttctaaagatcataagcaa |
213 |
Q |
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| T |
17631032 |
gttgcaaatgattgaaattctaaagatcaaaagcaa |
17631067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 19412005 - 19411831
Alignment:
| Q |
38 |
tggctaaaacagaaagttcacaatcggtgctcgacattggttctcatctcataagtcaagatcaatctttttgaaaaaataattggaaatcaactgtact |
137 |
Q |
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| T |
19412005 |
tggctaaaatagaaagttcagaattggtgttcaacattgattctcatctcaaaagtcaagatcaagctttttgatgaaaggaatggaaatcaattgtgct |
19411906 |
T |
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| Q |
138 |
aaaggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagca |
212 |
Q |
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| T |
19411905 |
tgaggatacagatcaggtagattagaatttcaagttaagggattcaaaagattgaagttctaaagatcaaaagca |
19411831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 55101 - 55202
Alignment:
| Q |
140 |
aggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaattagattgacataaaaagcagagat |
239 |
Q |
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| T |
55101 |
aggttgcagatcaggtagattagaattgca-gtcaagggatacaaagggttgaagttctaaagatcagaagcatatcagaatgacattagaagcagagat |
55199 |
T |
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| Q |
240 |
tca |
242 |
Q |
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| T |
55200 |
tca |
55202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 57737 - 57636
Alignment:
| Q |
140 |
aggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaattagattgacataaaaagcagagat |
239 |
Q |
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| T |
57737 |
aggttgcagatcaggtagattagaattgca-gtcaagggatacaaagggttgaagttctaaagatcagaagcatatcagaatgacattagaagcagagat |
57639 |
T |
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| Q |
240 |
tca |
242 |
Q |
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||| |
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| T |
57638 |
tca |
57636 |
T |
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