View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_high_15 (Length: 238)
Name: NF10074_high_15
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 8472322 - 8472470
Alignment:
| Q |
74 |
ttacatctacactaaatgaaaaacggtttaattcaacattaaatttatcaactacagttctccactcccataacataatgacatgatataaatgctaaat |
173 |
Q |
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| T |
8472322 |
ttacatctacactaaatgaaagacggtttaattcaacattaaatttatcaactacagttctccactcccataacataatgacatgatataaatgctaaat |
8472421 |
T |
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| Q |
174 |
gagaagaatgaaatagaatgttattacagagaacaacgggaggtttatgtt |
224 |
Q |
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| T |
8472422 |
gagaagaatgaaatagaatgttattacagagaacaac--gaggtttatgtt |
8472470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 6225049 - 6224979
Alignment:
| Q |
92 |
aaaaacggtttaattcaacattaaatttatcaactacagttctccactcccataacataatgacatgatat |
162 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
6225049 |
aaaagcggtttaattcaacactaaatttatcaactacagttctctactcccataacttaatgacataatat |
6224979 |
T |
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