View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_high_17 (Length: 229)
Name: NF10074_high_17
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 42889884 - 42890080
Alignment:
| Q |
16 |
aagggagttactcatattaagcttagaacaaacatactttatcctaaaactttaaaa-gcattaaatttatgagtcgtgtcagttataaagtattcaatc |
114 |
Q |
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| T |
42889884 |
aagggggttactcatattaagctcagaacaaacatactttaacctaaaactttaaaaagcattaaatttatgagtcgtgtcagttataaagtattcaatc |
42889983 |
T |
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| Q |
115 |
tccannnnnnnaaagaatgcgagacttctaactcacatataactaaagtttctgctagccacaaccactacgctatcaacaccaatactctacttat |
211 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42889984 |
tccatttttttaaagaatgcgagacttctaactcacatataactaaagtttctgctagccacaaccactacgctatcaacaccaatactctacttat |
42890080 |
T |
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