View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_high_18 (Length: 208)
Name: NF10074_high_18
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 44668354 - 44668523
Alignment:
| Q |
22 |
tccaacatttcaacagttacgtgctgcatcaccaccacatgtgcaatatctccttcataagctaaattccattttcgaataaactcacaatctaaaggct |
121 |
Q |
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| T |
44668354 |
tccaacatttcaacagtaacgtgctgcatcaccaccacatgtgcaatatctccttcataagctagattccattttcgaataaactcacaatctaaaggct |
44668453 |
T |
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| Q |
122 |
tctcaaaaacaactgtattgctatattcattcaacattgtgcaaatgccagcatcgcgaagtttcctttt |
191 |
Q |
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| T |
44668454 |
tctcaaaaacaactgtattgctatattcattcaacattgtgcaaatgccagcatcgcgaagtttcctttt |
44668523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 44640041 - 44640204
Alignment:
| Q |
22 |
tccaacatttcaacagttacgtgctgcatcaccaccacatgtgcaatatctccttcataagctaaattccattttcgaataaactcacaatctaaaggct |
121 |
Q |
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||||||||||||| ||| || || ||||||||||||||||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||| ||||||| |
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| T |
44640041 |
tccaacatttcaatagtaacatgttgcatcaccaccacatgtgcaatatttccttgatatgctaaactccactttcgaataaactcaatatccaaaggct |
44640140 |
T |
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| Q |
122 |
tctcaaaaacaactgtattgctatattcattcaacattgtgcaaatgccagcatcgcgaagttt |
185 |
Q |
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| T |
44640141 |
tctcaaaaacaactgtgttgctaaattcatttaacattgtaccaattccagcatcacgaagttt |
44640204 |
T |
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