View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10074_high_2 (Length: 507)
Name: NF10074_high_2
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 119 - 482
Target Start/End: Original strand, 39146232 - 39146594
Alignment:
| Q |
119 |
ggtaggtgacttttaagacagaagagtatgtgttgaacacaattgctacaaaaacagaaataaaattgcacgacaaagtccaaccacattaacatcgaac |
218 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39146232 |
ggtaggtgacttt-aagactgaagagtttgtgttgaagtcacttgctccaaaaacagaaataaaattgcaagacaaagtccaaccacattaacatcgaac |
39146330 |
T |
|
| Q |
219 |
caaaattagaatgaaccttgttcaacatattaaccaaatcaggacattgcttgctgtgagaaaagttgattctagtttccctctaccttttacgtgtgct |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
39146331 |
caaaattggaatgaaccttgttcaacatattaaccaaatcaggactttgcttgctttgagaaaagttgattttagtttccatttaccttttacgtgtgct |
39146430 |
T |
|
| Q |
319 |
caccatccacaagtagtgaatgattacttgataagacacggcacggaaactaggttaatttttatgacgagaactaaatagtgttggaaccttagccgga |
418 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | || || |||||| ||||| || ||||| |||| ||||||||| ||||||| ||| |
|
|
| T |
39146431 |
caccatccacaagtagtgtatgattacttgataagacacggcaggtaacctgggttaaattttacgaggagaattaaacagtgttggagccttagctgga |
39146530 |
T |
|
| Q |
419 |
attggtgggaaattgaagagtaaacatcgaatcttaagattttgaacgggtgtgtgaattgaaa |
482 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
39146531 |
attggtgtgaaattgaagagtaaacatcaaatcttaagattttgaacggatttgtgaattgaaa |
39146594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 39146144 - 39146233
Alignment:
| Q |
18 |
aaactgttatcaaaaccacagtatttccattcaaaaaa--------tacagtaattcaaacacgcaatgaatattgcaaaatgaaaatgg |
99 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39146144 |
aaacttttatcaataccacagtatttccattccaaaaaacaaaaactagagtaattcaaacacgcaatgaatattggaaaatgaaaatgg |
39146233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 5171090 - 5171046
Alignment:
| Q |
400 |
tgttggaaccttagccggaattggtgggaaattgaagagtaaaca |
444 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
5171090 |
tgttggaaccttagctggatttggtgggaaattgaagagtaaaca |
5171046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 9693808 - 9693726
Alignment:
| Q |
400 |
tgttggaaccttagccggaattggtgggaaattgaagagtaaacatcgaatcttaagattttgaacgggtgtgtgaattgaaaa |
483 |
Q |
| |
|
||||||||| |||| |||||| || ||||||||||||||||||| | | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
9693808 |
tgttggaactttagatggaattagtaggaaattgaagagtaaaca-caagtctttagattttgaactagtgtgtgaattgaaaa |
9693726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 464
Target Start/End: Complemental strand, 23380721 - 23380655
Alignment:
| Q |
398 |
agtgttggaaccttagccggaattggtgggaaattgaagagtaaacatcgaatcttaagattttgaa |
464 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
23380721 |
agtgttggaaacttagttggaattggcgggaaattgaagagtacacactaagtcttaagattttgaa |
23380655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University