View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10074_low_12 (Length: 291)

Name: NF10074_low_12
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10074_low_12
NF10074_low_12
[»] chr6 (4 HSPs)
chr6 (18-258)||(24072576-24072819)
chr6 (210-277)||(31028454-31028522)
chr6 (210-275)||(34948848-34948914)
chr6 (210-275)||(398628-398694)
[»] chr1 (6 HSPs)
chr1 (22-267)||(35951247-35951493)
chr1 (210-275)||(7433456-7433522)
chr1 (210-275)||(26144266-26144332)
chr1 (210-271)||(42311031-42311093)
chr1 (212-275)||(321469-321533)
chr1 (212-275)||(41972367-41972430)
[»] chr5 (14 HSPs)
chr5 (22-273)||(202652-202917)
chr5 (212-275)||(12278952-12279016)
chr5 (210-277)||(36293711-36293779)
chr5 (210-271)||(10033942-10034004)
chr5 (210-275)||(13817988-13818054)
chr5 (212-273)||(28801300-28801362)
chr5 (210-275)||(39434707-39434773)
chr5 (210-268)||(16155015-16155074)
chr5 (212-269)||(31501808-31501866)
chr5 (212-272)||(33430335-33430396)
chr5 (210-250)||(16333966-16334006)
chr5 (212-271)||(17332643-17332703)
chr5 (212-275)||(31680378-31680442)
chr5 (212-275)||(37254652-37254716)
[»] chr8 (10 HSPs)
chr8 (210-275)||(36408562-36408628)
chr8 (212-270)||(3435285-3435344)
chr8 (212-275)||(16788117-16788181)
chr8 (212-275)||(23402119-23402183)
chr8 (210-272)||(3648884-3648947)
chr8 (214-275)||(4404019-4404081)
chr8 (212-277)||(34136917-34136983)
chr8 (210-275)||(39914526-39914592)
chr8 (210-274)||(29728476-29728541)
chr8 (212-275)||(2729288-2729352)
[»] chr2 (7 HSPs)
chr2 (210-275)||(2958191-2958256)
chr2 (210-275)||(41251724-41251790)
chr2 (210-275)||(42439997-42440063)
chr2 (212-275)||(771010-771074)
chr2 (212-275)||(45418594-45418658)
chr2 (212-275)||(26237968-26238031)
chr2 (212-275)||(8147362-8147426)
[»] chr4 (18 HSPs)
chr4 (210-275)||(17511324-17511390)
chr4 (210-275)||(20129321-20129387)
chr4 (212-275)||(50205169-50205233)
chr4 (210-275)||(13012199-13012265)
chr4 (210-275)||(26439369-26439435)
chr4 (210-275)||(34407374-34407440)
chr4 (212-275)||(3292988-3293052)
chr4 (212-275)||(6690327-6690391)
chr4 (212-267)||(26448072-26448128)
chr4 (212-275)||(30216834-30216898)
chr4 (212-275)||(43143676-43143740)
chr4 (212-274)||(30109968-30110031)
chr4 (210-272)||(43355918-43355981)
chr4 (210-275)||(10352974-10353040)
chr4 (210-275)||(25930719-25930785)
chr4 (210-275)||(29319795-29319861)
chr4 (210-275)||(47500784-47500850)
chr4 (210-273)||(40529028-40529092)
[»] chr3 (9 HSPs)
chr3 (210-275)||(6269516-6269582)
chr3 (210-274)||(6930984-6931049)
chr3 (210-275)||(22968534-22968600)
chr3 (210-275)||(34084212-34084278)
chr3 (210-275)||(39771801-39771867)
chr3 (212-275)||(45182992-45183056)
chr3 (210-275)||(19565591-19565657)
chr3 (212-272)||(27935192-27935253)
chr3 (212-275)||(11018304-11018368)
[»] chr7 (7 HSPs)
chr7 (210-274)||(3114186-3114251)
chr7 (210-275)||(5555498-5555564)
chr7 (210-275)||(14777197-14777263)
chr7 (212-275)||(34389148-34389212)
chr7 (212-275)||(35090179-35090243)
chr7 (210-267)||(40920093-40920151)
chr7 (212-272)||(33685578-33685639)
[»] scaffold0154 (1 HSPs)
scaffold0154 (212-274)||(31492-31555)
[»] scaffold0069 (1 HSPs)
scaffold0069 (210-277)||(17851-17919)
[»] scaffold2142 (1 HSPs)
scaffold2142 (210-275)||(533-599)
[»] scaffold0041 (1 HSPs)
scaffold0041 (210-267)||(52944-53002)
[»] scaffold0002 (1 HSPs)
scaffold0002 (210-275)||(480547-480613)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 24072819 - 24072576
Alignment:
Q  18 catttatcctgttttagattaactcctttttctccgtgaatttttcattcaaccagaaattgcctcttcagtatctttctcaagtcttgttgaaattcgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24072819 catttatcctgttttagattaactcctttttctccgtgaatttctcattcaaccagaaattgcctcttcagtatctttctcaagtcttgttgaaattcgc 24072720  T
Q  118 aagtggaaaaggcggaaacttgtgttttctttttctagaatctaagcg--cgcgtttctttttctgggatgtttgcccaataannnnnnnagttaatgtg 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||| | | | ||||||||||||||||       | ||| ||||    
T  24072719 aagtggaaaaggcggaaacttgtgttttctttttctggaatctaagcgcgcgcgtttcttctccggtgatgtttgcccaataatttttataattagtgtg 24072620  T
Q  216 ttaatgggtttttgggttcgatctaatgtgc-aaaattatcgat 258  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  24072619 ttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 31028454 - 31028522
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgctc 277  Q
    |||||||||||| | |||| |||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  31028454 aatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctc 31028522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 34948848 - 34948914
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| | ||||||||||    
T  34948848 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgc 34948914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 398694 - 398628
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  398694 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 398628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 35951247 - 35951493
Alignment:
Q  22 tatcctgttttagattaactcctttttctccgtgaatttttcattcaaccagaaattgcctcttcagtatctttctcaagtcttgttgaaattcgcaagt 121  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||    
T  35951247 tatcccgttttagattaactcatttttctccttgaatttttcattcaaccagaaattccctcttcagtatctttcttaagtctttttaaaattcgcaagt 35951346  T
Q  122 ggaaaaggcggaaacttgtgttttctttttctagaatctaagcgcgcgtttctttttctgggatgtttgcccaataannnnnnnagttaatgtgttaatg 221  Q
    | |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| |        |||| ||||||||||    
T  35951347 gcaaaaagcggaaacttgtgttttctttttctggaatctaagcgtgcgtttcttttcctgggatgtttccccaatgatattttttgttagtgtgttaatg 35951446  T
Q  222 ggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgg 267  Q
    || | |||||||||| ||||||| | |||||||||||||||| ||||    
T  35951447 ggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 7433522 - 7433456
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||| |||||||  |||||||||||    
T  7433522 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgc 7433456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 26144332 - 26144266
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  26144332 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 26144266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 42311031 - 42311093
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcga 271  Q
    |||||||||| ||| |||||||||   |||||||||| |||||||||||||||| ||||||||    
T  42311031 aatgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 42311093  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 321469 - 321533
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||  ||||||||| |||||||||  ||||| |||||||||||| |||| |||||||    
T  321469 tgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgc 321533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 41972367 - 41972430
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || |||| |||| |||||||||||| |||||||||||||||| || |||||||||    
T  41972367 tgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgc 41972430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 202917 - 202652
Alignment:
Q  22 tatcctgttttagattaactcctttttctccgtgaatttttcattcaaccagaaattgcctcttcagtatctttctcaagtcttgttgaaattcgcaagt 121  Q
    ||||||||||||||||||||| |||| |||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  202917 tatcctgttttagattaactcattttcctccttgaattttttattcaaccaggaattggctcttcagtatctttctcaagtcttgttaaaattcgcaagt 202818  T
Q  122 ggaaaaggcggaaac------------ttgtgttttctttttctagaatctaagcgcgcgtttctttttctgggatgtttgcccaataa-nnnnnnnagt 208  Q
    |||||||||||||||            ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||         ||    
T  202817 ggaaaaggcggaaactgcgacaaaaatttgtgttttctttttctggaatctaagcgcgcgtttcttttccttggatgtttgcccaataatatttttttgt 202718  T
Q  209 taatgtgttaatgggtttttgggttcgatctaatgtgca-aaattatcgatcgagtccgggcgacc 273  Q
    || ||| |||||||| |||||||||||| ||||||| || ||||||||||||||| ||||||||||    
T  202717 tagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgacc 202652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 12278952 - 12279016
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| ||  |||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  12278952 tgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgc 12279016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 36293711 - 36293779
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgctc 277  Q
    |||||||||||||| |||||||||   |||||||| ||||| ||||||||||||||||| |||||||||    
T  36293711 aatgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctc 36293779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 10034004 - 10033942
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcga 271  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| ||||||||    
T  10034004 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 10033942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 13818054 - 13817988
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| ||| ||||||||    
T  13818054 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgc 13817988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 28801362 - 28801300
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgacc 273  Q
    |||||||||||| |||||| || |||||||||||| |||||||||||||||| | ||||||||    
T  28801362 tgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 39434773 - 39434707
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   ||||||||| |||| |||||||||||| ||||||||||||    
T  39434773 aatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgc 39434707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 16155074 - 16155015
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccggg 268  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| |||||    
T  16155074 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 31501808 - 31501866
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggc 269  Q
    ||||||||| || ||||||||| | |||||||||| |||||||||||||||| ||||||    
T  31501808 tgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggc 31501866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 33430396 - 33430335
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgac 272  Q
    ||||||||| || ||||||||| | ||||||| |||||| |||||||||||| |||||||||    
T  33430396 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 16333966 - 16334006
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa 250  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  16333966 aatgtgttaatgggcttttgggttgaatctaatgtgcaaaa 16334006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 17332643 - 17332703
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcga 271  Q
    ||||||||| || ||||||||| | |||||| ||||||| |||||||||||| ||||||||    
T  17332643 tgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcga 17332703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 31680442 - 31680378
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | ||||||| | |||| |||||||||||| ||||||||||||    
T  31680442 tgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgc 31680378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 37254716 - 37254652
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| |  ||||||||| | |||||||||||||| |||||||||||| | ||||||||||    
T  37254716 tgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgc 37254652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 36408628 - 36408562
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  36408628 aatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 36408562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3435344 - 3435285
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcg 270  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||| || |||||||    
T  3435344 tgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 16788117 - 16788181
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  16788117 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 16788181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 23402183 - 23402119
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaa-attatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | |||||| |||||| ||||||||||||| ||||||||||||    
T  23402183 tgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgc 23402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 3648884 - 3648947
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgac 272  Q
    |||||||||||||| |||||||||   ||||||||| |||| |||||||||||| |||||||||    
T  3648884 aatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 4404081 - 4404019
Alignment:
Q  214 tgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||| || |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  4404081 tgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 4404019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 34136917 - 34136983
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgctc 277  Q
    ||||||||| |  |||||||||   |||||||||||||| |||||||||||| ||||||||||||||    
T  34136917 tgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctc 34136983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 39914592 - 39914526
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  39914592 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 39914526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 29728476 - 29728541
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccg 274  Q
    |||||||||||| | |||||||||   |||||||||||||| ||||||||||||  ||||||||||    
T  29728476 aatgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccg 29728541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 2729288 - 2729352
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| |||||| || ||| ||||||| |||| |||||||||||| ||||||| ||||    
T  2729288 tgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgc 2729352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 2958191 - 2958256
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||| |||| |||||||    
T  2958191 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaattatcgatcgagcccggacgaccgc 2958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 41251724 - 41251790
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| ||||||||||||    
T  41251724 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 41251790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 42440063 - 42439997
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  42440063 aatgtgttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 42439997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 771074 - 771010
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| |||| |||| | |||||||||||||| |||||||||||| ||||||||||||    
T  771074 tgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgc 771010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 45418658 - 45418594
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  45418658 tgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgc 45418594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 26238031 - 26237968
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||  |||||| ||  ||||||| ||||||| ||||||||||| ||||||||||||    
T  26238031 tgtgttaatggacttttggtttgcatctaatttgcaaaaatatcgatcgagcccgggcgaccgc 26237968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 8147426 - 8147362
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaa-attatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| |  ||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||    
T  8147426 tgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgc 8147362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 17511324 - 17511390
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||||| ||||||||||    
T  17511324 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgc 17511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 20129387 - 20129321
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  20129387 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 20129321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 50205169 - 50205233
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| |||||||||||| ||||||||||||||||  |||||||||||    
T  50205169 tgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgc 50205233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 13012265 - 13012199
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||  ||||||||||||||| |||||||||||| ||||||||||||    
T  13012265 aatgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 13012199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 26439369 - 26439435
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| ||||||||||| |||| ||||||||||||    
T  26439369 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgc 26439435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 34407374 - 34407440
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| ||||||||||| |||| ||||||||||||    
T  34407374 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgc 34407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 3292988 - 3293052
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | ||||||| |||||| |||||||||||| ||||||||||||    
T  3292988 tgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgc 3293052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 6690327 - 6690391
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | ||||||| |||||| |||||||||||| ||||||||||||    
T  6690327 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgc 6690391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 26448128 - 26448072
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgg 267  Q
    |||||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||    
T  26448128 tgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccgg 26448072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 30216834 - 30216898
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||||| ||||||||||||    
T  30216834 tgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 30216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 43143676 - 43143740
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  43143676 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 43143740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 30110031 - 30109968
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccg 274  Q
    |||||||||||  ||| || || | |||||||||||||| ||||||||||||||||||||||||    
T  30110031 tgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccg 30109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 43355981 - 43355918
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgac 272  Q
    |||||||||||||| |||||||||   |||||||||| ||||||||||| |||| |||||||||    
T  43355981 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 43355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 10352974 - 10353040
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||  |||| |||| | |||||||||| |||||||||||| ||| ||||||||||||    
T  10352974 aatgtgttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgc 10353040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 25930785 - 25930719
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   | |||||||||||| |||| ||||||| ||||||||||||    
T  25930785 aatgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgc 25930719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 29319795 - 29319861
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| | || |||||||    
T  29319795 aatgtgttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgc 29319861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 47500850 - 47500784
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  47500850 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 47500784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 40529092 - 40529028
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgacc 273  Q
    |||||||||||| |||||| ||||   | |||||||||||| ||||||||||||||||| |||||    
T  40529092 aatgtgttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 6269516 - 6269582
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||| |||||||    
T  6269516 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgc 6269582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 6930984 - 6931049
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccg 274  Q
    ||||||||||| || ||||||||| ||||||||| || |||||||||||||||| |||||||||||    
T  6930984 aatgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccg 6931049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 22968534 - 22968600
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| |||| |||||||    
T  22968534 aatgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgc 22968600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 34084212 - 34084278
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||  |||| ||||  || |||||||||||| |||||||||||||||||||||||||    
T  34084212 aatgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgc 34084278  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 39771867 - 39771801
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||||| |||||||||   |||||||||| ||||||||||| |||| ||||||||||||    
T  39771867 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgc 39771801  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 45183056 - 45182992
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | ||||||| |||||| |||||||||||| ||||||||||||    
T  45183056 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgc 45182992  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 19565591 - 19565657
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    ||||||||||||| ||||| |||| | |||||||||| |||||||||||| ||  ||||||||||||    
T  19565591 aatgtgttaatggattttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgc 19565657  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 27935253 - 27935192
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgac 272  Q
    |||||||||| | ||||||||| | | |||||||||||| |||||||||||| |||||||||    
T  27935253 tgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgac 27935192  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 11018304 - 11018368
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || |||||||||   |||||||||||||| |||||||||||| | ||||||||||    
T  11018304 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgc 11018368  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 3114186 - 3114251
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccg 274  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| |||||||||||    
T  3114186 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 3114251  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 5555564 - 5555498
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||| ||||||||| |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  5555564 aatgcgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 5555498  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 14777197 - 14777263
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||||||||   |||||||||||||| |||||||||||| ||||||||||||    
T  14777197 aatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 14777263  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 34389148 - 34389212
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||||| ||||||||||||    
T  34389148 tgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 34389212  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 35090243 - 35090179
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgc 275  Q
    ||||||||| || ||||||||| | |||||||||| |||||||| ||||||| ||||||||||||    
T  35090243 tgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgc 35090179  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 40920093 - 40920151
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgg 267  Q
    ||||||||||| || |||||||||  ||||||||||| |||||||||||||||| ||||    
T  40920093 aatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 33685639 - 33685578
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgac 272  Q
    |||||||||||| ||||||||| | | |||||||| |||||||||||||||| ||| |||||    
T  33685639 tgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgac 33685578  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 31555 - 31492
Alignment:
Q  212 tgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccg 274  Q
    |||||||||||| ||||||||| | |||| ||||||||| |||||||||||| |||||||||||    
T  31555 tgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccg 31492  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 17919 - 17851
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgggcgaccgctc 277  Q
    |||||||||||||| |||||||||   |||||||||| |||||||||||||||| |||| ||| |||||    
T  17919 aatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctc 17851  T

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Target: scaffold2142 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 599 - 533
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  599 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 533  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 53002 - 52944
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgc-aaaattatcgatcgagtccgg 267  Q
    ||||||||||| || |||||||||  ||||||||||| |||||||||||||||| ||||    
T  53002 aatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 480547 - 480613
Alignment:
Q  210 aatgtgttaatgggtttttgggttcgatctaatgtgcaaaa-ttatcgatcgagtccgggcgaccgc 275  Q
    |||||||||||| | |||| ||||   |||||||||||||| |||||||||||| ||||||||||||    
T  480547 aatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 480613  T

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