View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10074_low_18 (Length: 249)

Name: NF10074_low_18
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10074_low_18
NF10074_low_18
[»] chr1 (19 HSPs)
chr1 (5-235)||(9105032-9105262)
chr1 (1-235)||(9096850-9097085)
chr1 (1-236)||(9082579-9082814)
chr1 (1-235)||(8964347-8964581)
chr1 (1-235)||(8999498-8999732)
chr1 (5-232)||(9056400-9056627)
chr1 (1-232)||(8874112-8874343)
chr1 (1-235)||(9142912-9143146)
chr1 (1-235)||(9152465-9152699)
chr1 (174-220)||(9384233-9384279)
chr1 (101-223)||(9399567-9399689)
chr1 (159-212)||(9098313-9098366)
chr1 (176-232)||(9318334-9318390)
chr1 (176-232)||(9319912-9319968)
chr1 (183-232)||(9350236-9350285)
chr1 (101-142)||(9432971-9433012)
chr1 (176-217)||(11005081-11005122)
chr1 (176-217)||(11033191-11033232)
chr1 (165-217)||(9234118-9234170)
[»] chr6 (1 HSPs)
chr6 (166-232)||(15927240-15927306)
[»] chr3 (1 HSPs)
chr3 (176-220)||(9159602-9159646)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 9105262 - 9105032
Alignment:
Q  5 ttgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaagttga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9105262 ttgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttctatatcgatttcttcctcttttctaagttga 9105163  T
Q  105 tcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagc 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9105162 tcataaatccaaaagggaaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagc 9105063  T
Q  205 tataaacatcagccttataggaaactccccc 235  Q
    |||||||||||||||||||||||||||||||    
T  9105062 tataaacatcagccttataggaaactccccc 9105032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9097085 - 9096850
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctctttt-ctaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9097085 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctctttttctaa 9096986  T
Q  100 gttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccc 199  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9096985 gttgatcataaatccaaaaggggaaatatatctaacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccc 9096886  T
Q  200 aaagctataaacatcagccttataggaaactccccc 235  Q
    |||||||||||||||||| |||||||||||||||||    
T  9096885 aaagctataaacatcagctttataggaaactccccc 9096850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9082814 - 9082579
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||  || |||||| || || |||||| | | ||| | |||    
T  9082814 tcaattgtatacaccaaagagcgaccatgatcattttctttactattttcatatcctcttctacgacattttctatttctatttctccttgtttgccaag 9082715  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||| ||||||||||| ||||| |  || |||||||| | ||| ||||| || |||||||| ||||||| |||||||||||||||||||||||||    
T  9082714 ttgatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatccca 9082615  T
Q  201 aagctataaacatcagccttataggaaactccccct 236  Q
    || ||||||||||||||||| || || |||||||||    
T  9082614 aaactataaacatcagccttgtacgacactccccct 9082579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8964347 - 8964581
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    |||| |||||||||||||| || || |||||||||||||||||  ||||| | |||||||||| || || ||| || || |||||| | |||| || ||     
T  8964347 tcaactgtatacaccaaagtgcgactatgatcatcttctttactgttttcttttcctcctctgtgacatcttctatttctatttctccttcttgtccaaa 8964446  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||||||||| || || ||||| | |||||||||||| |  || | ||  || |||||||| || || |||||||||||||||||||||||||||    
T  8964447 ttgatcataaatccataaaggaaaataaagctgacttgaatgctccgcttgggcatttaggtttttccttttacctgccatctccatcaaaagcatccca 8964546  T
Q  201 aagctataaacatcagccttataggaaactccccc 235  Q
    |||||||||||||||||||||||||| ||||||||    
T  8964547 aagctataaacatcagccttataggacactccccc 8964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8999498 - 8999732
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||| | || ||||||| || || ||| || || |||||| |||||| || ||     
T  8999498 tcaattgtatacaccaaagtgcgactatgatcatcttctttactattttcttttcgtcctctgggacatcttctatttctatttctccctcttgtccaaa 8999597  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||||||||| || || ||||| | |||||||||||| |  || | |   || |||||||| || || |||||||||||||||||||||||||||    
T  8999598 ttgatcataaatccataaaggaaaataaagctgacttgaatgctccgcttggacatttaggtttttccttttacctgccatctccatcaaaagcatccca 8999697  T
Q  201 aagctataaacatcagccttataggaaactccccc 235  Q
    ||||||||||||||||||||||| || ||||||||    
T  8999698 aagctataaacatcagccttataagacactccccc 8999732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 9056400 - 9056627
Alignment:
Q  5 ttgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaagttga 104  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||  | || ||| |  || |||||| ||||||||  |||||||    
T  9056400 ttgtatacaccaaagagcgaccatgaccatcttctttactatttttatatcctcctctgtaacatcttctagttctatttctgcctctttttgaagttga 9056499  T
Q  105 tcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagc 204  Q
    ||||||||||||||||| |||||   ||| ||||||||   |||||  |  || | |||||| ||||||| |||||| |||||||||||||| ||||| |    
T  9056500 tcataaatccaaaagggaaaataatgctggcttgaatgcgctgcatgtgggttcatgtttttcctcttgcttgccatttccatcaaaagcataccaaaac 9056599  T
Q  205 tataaacatcagccttataggaaactcc 232  Q
    ||||||||||||||||||| || |||||    
T  9056600 tataaacatcagccttatacgacactcc 9056627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8874343 - 8874112
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||| | ||||||||||  | || ||| || || |||||| | || | || ||     
T  8874343 tcaattgtatacaccaaagtgccactatgatcatcttctttactattttcttttcctcctctgtcacatcttctatttctatttctccttcatgtccaaa 8874244  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||||||||| || || ||||| | |||||||||||| |  || | ||  || |||||||| || || ||||||||| |||||||||||||||||    
T  8874243 ttgatcataaatccataaaggaaaataaagctgacttgaatgctcagcttgggcatttaggtttttccttttacctgccatcaccatcaaaagcatccca 8874144  T
Q  201 aagctataaacatcagccttataggaaactcc 232  Q
    || ||||||||||||||||||||||| |||||    
T  8874143 aaactataaacatcagccttataggacactcc 8874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9143146 - 9142912
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||  |||||  | |||||||| | || || ||| || || |||||| | |||| |  ||     
T  9143146 tcaattgtatacaccaaagtgcaactatgatcatcttctttagtattttattttcctcctccgtgacatcttctatttctatttctccttcttgtgcaaa 9143047  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||||||||| || || || || |  || |||||||  |  |||| ||  || ||||||||||| || | ||||||||||||||||||||||||     
T  9143046 ttgatcataaatccataaaggaaagtaaagttggcttgaatactccgcatgggcatttaggttttttcttttacttgccatctccatcaaaagcatcccg 9142947  T
Q  201 aagctataaacatcagccttataggaaactccccc 235  Q
    || ||||||||||| ||||||||||| ||||||||    
T  9142946 aaactataaacatcggccttataggacactccccc 9142912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9152699 - 9152465
Alignment:
Q  1 tcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaag 100  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||| |||||  | |||||||||| || || ||| || || || ||| | |||| || ||     
T  9152699 tcaattgtatacaccaaagtgcaactatgatcatcttttttactattttattttcctcctctgtgacatcttctatttctatctctccttcttgtccaaa 9152600  T
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||| |||||| ||||| || || || |  ||||||||||| | | | | ||  || | |||||| || || | || ||||||||||||||||||||||    
T  9152599 ttgattataaattcaaaacggaaagtaaagttgacttgaatgctcttcttcggaatttaagtttttgcttttacttgtcatctccatcaaaagcatccca 9152500  T
Q  201 aagctataaacatcagccttataggaaactccccc 235  Q
    || ||||||||||| ||||||||||| ||||||||    
T  9152499 aaactataaacatcggccttataggacactccccc 9152465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 9384233 - 9384279
Alignment:
Q  174 cctgccatctccatcaaaagcatcccaaagctataaacatcagcctt 220  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  9384233 cctgccatttccatcaaaagcattccaaagctatatacatcagcctt 9384279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 9399567 - 9399689
Alignment:
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 200  Q
    ||||||||||||||||||||||||||| |  ||||||||||| |  ||||  |  || |  ||| ||||| | | ||| || || ||||||||||| |||    
T  9399567 ttgatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttctcctacttgcaatttcaatcaaaagcatacca 9399666  T
Q  201 aagctataaacatcagccttata 223  Q
    |||||||| ||||||||||||||    
T  9399667 aagctatacacatcagccttata 9399689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 9098313 - 9098366
Alignment:
Q  159 aggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaaca 212  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||    
T  9098313 aggtttttcctcttgcttgctatctccatcaaaagcataccaaaactataaaca 9098366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 9318390 - 9318334
Alignment:
Q  176 tgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 232  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| |||||    
T  9318390 tgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcc 9318334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 9319912 - 9319968
Alignment:
Q  176 tgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 232  Q
    |||||| |||||||||||||| || |||||||| ||||||||||| ||||| |||||    
T  9319912 tgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcc 9319968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 9350236 - 9350285
Alignment:
Q  183 tccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 232  Q
    |||||||||||||| || |||||||| ||||||||||| ||||| |||||    
T  9350236 tccatcaaaagcattccgaagctatatacatcagccttgtaggatactcc 9350285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 9433012 - 9432971
Alignment:
Q  101 ttgatcataaatccaaaaggggaaatatatctgacttgaatg 142  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  9433012 ttgatcataaatccaaaaggggaaataaagttgacttgaatg 9432971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 11005122 - 11005081
Alignment:
Q  176 tgccatctccatcaaaagcatcccaaagctataaacatcagc 217  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  11005122 tgccatctccatcaacaacatcccaaagctatagacatcagc 11005081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 11033191 - 11033232
Alignment:
Q  176 tgccatctccatcaaaagcatcccaaagctataaacatcagc 217  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  11033191 tgccatctccatcaacaacatcccaaaactataaacatcagc 11033232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 9234170 - 9234118
Alignment:
Q  165 tttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagc 217  Q
    |||||||| |||||||| |||||||||||||| ||||| || || ||||||||    
T  9234170 tttctcttacctgccatttccatcaaaagcattccaaaactgtatacatcagc 9234118  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 15927306 - 15927240
Alignment:
Q  166 ttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 232  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  15927306 ttctcttacttgccatttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcc 15927240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 9159602 - 9159646
Alignment:
Q  176 tgccatctccatcaaaagcatcccaaagctataaacatcagcctt 220  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||    
T  9159602 tgccatttccatcaaaagcattccaaaactataaacatcagcctt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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