View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10074_low_20 (Length: 242)

Name: NF10074_low_20
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10074_low_20
NF10074_low_20
[»] chr5 (3 HSPs)
chr5 (116-223)||(32433625-32433733)
chr5 (129-192)||(43146395-43146458)
chr5 (170-215)||(43146186-43146231)
[»] chr8 (2 HSPs)
chr8 (170-215)||(9305094-9305139)
chr8 (159-215)||(29525708-29525764)
[»] chr7 (2 HSPs)
chr7 (171-215)||(37025621-37025665)
chr7 (129-189)||(48065050-48065110)
[»] chr3 (3 HSPs)
chr3 (129-192)||(35637268-35637331)
chr3 (129-189)||(49323226-49323286)
chr3 (172-212)||(54513983-54514023)
[»] chr2 (3 HSPs)
chr2 (129-192)||(39822945-39823008)
chr2 (170-215)||(18059013-18059058)
chr2 (132-192)||(18058792-18058852)
[»] chr1 (2 HSPs)
chr1 (170-215)||(21948084-21948129)
chr1 (129-189)||(43824219-43824279)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 32433733 - 32433625
Alignment:
Q  116 ttaaattaaatcatttttt-aaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttgggttaaaattcacctaagaatttct 214  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  32433733 ttaaattaaatcatttttttaaggttaataacatgtgtcatatgttaattagataggtgtaagaatgatgtgttgggttagagttcacctaagaatttct 32433634  T
Q  215 cctatcata 223  Q
    |||||||||    
T  32433633 cctatcata 32433625  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 43146395 - 43146458
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttgggt 192  Q
    |||||||| |||||||||||||||||||  || ||| | | ||||||||||| |||||||||||    
T  43146395 ttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttgggt 43146458  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 43146231 - 43146186
Alignment:
Q  170 ggtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    |||||||||||||| |||||||| | ||||||| ||||||||||||    
T  43146231 ggtgtaagaatgatttgttgggtaagaattcacgtaagaatttctc 43146186  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 9305139 - 9305094
Alignment:
Q  170 ggtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  9305139 ggtgtaagaataatgtgttggattagaattcacctaagaatttctc 9305094  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 29525764 - 29525708
Alignment:
Q  159 ttaattagataggtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    |||||||| | |||||||||||| |||||||||| | | ||||| ||||||||||||    
T  29525764 ttaattagttgggtgtaagaatgttgtgttgggtaagagttcacataagaatttctc 29525708  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 37025621 - 37025665
Alignment:
Q  171 gtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    |||||||||||||||||||||| | | ||||||||||||||||||    
T  37025621 gtgtaagaatgatgtgttgggtgagagttcacctaagaatttctc 37025665  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 48065050 - 48065110
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttg 189  Q
    |||||||| |||||||||||||||||||  || ||| | | ||||||||||| ||||||||    
T  48065050 ttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttg 48065110  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 35637268 - 35637331
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttgggt 192  Q
    |||||||| |||||||||||||||||||  || ||| | | ||||||||||| |||||||||||    
T  35637268 ttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttgggt 35637331  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 49323226 - 49323286
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttg 189  Q
    |||||||| ||||| ||||||||||||   || ||| | ||||||||||||||||||||||    
T  49323226 ttttttaaagttaacaacatgtgtcatctttttattggttaggtgtaagaatgatgtgttg 49323286  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 54514023 - 54513983
Alignment:
Q  172 tgtaagaatgatgtgttgggttaaaattcacctaagaattt 212  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  54514023 tgtaagaatgatgtgttgggtgagagttcacctaagaattt 54513983  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 39822945 - 39823008
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttgggt 192  Q
    ||||||||  ||||||||||||||||||  || ||| | | |||||||||||||||||||||||    
T  39822945 ttttttaaatttaataacatgtgtcatatttttattggttgggtgtaagaatgatgtgttgggt 39823008  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 18059013 - 18059058
Alignment:
Q  170 ggtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    ||||||||||||||||||||||| | | ||||| ||||||||||||    
T  18059013 ggtgtaagaatgatgtgttgggtaagagttcacgtaagaatttctc 18059058  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 18058852 - 18058792
Alignment:
Q  132 tttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttgggt 192  Q
    ||||| |||||||||||||||||||  || |||||  | |||||||||| |||||||||||    
T  18058852 tttaaagttaataacatgtgtcatatttttattagtcaagtgtaagaataatgtgttgggt 18058792  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 21948129 - 21948084
Alignment:
Q  170 ggtgtaagaatgatgtgttgggttaaaattcacctaagaatttctc 215  Q
    ||||||||||||| ||||| ||| ||| ||||||||||||||||||    
T  21948129 ggtgtaagaatgacgtgttaggtgaaagttcacctaagaatttctc 21948084  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 43824279 - 43824219
Alignment:
Q  129 ttttttaaggttaataacatgtgtcataagttaattagataggtgtaagaatgatgtgttg 189  Q
    |||||||| ||||||||||||||||||   || ||| | | ||||||||||||||||||||    
T  43824279 ttttttaaagttaataacatgtgtcatttttttattggttgggtgtaagaatgatgtgttg 43824219  T

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