View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_low_21 (Length: 242)
Name: NF10074_low_21
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40764194 - 40763968
Alignment:
| Q |
1 |
tgaccagaaacagtcaaaaatgcttgacgggcaaagaaatctttagcataatctacctttccatcttttcgaggaataccgggctgaagtttagatcttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
40764194 |
tgaccagaaacagtcaaaaatgcttgacgggcaaagaaatctttagcataatctatctttccatcctttcgaggaatactgggctgaagtttagatcttt |
40764095 |
T |
|
| Q |
101 |
cttccagcttggatacattccgtttagcctttttaagttcatccacagcagcagtaatctccttctccttctcctgagcaacaagcttagcagcttcaac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764094 |
cttccagcttggatacattccgtttagcttttttaagttcatccacagcagcagtaatctccttctccttctcctgagcaacaagcttagcagcttcaac |
40763995 |
T |
|
| Q |
201 |
attagattcagtaggaggaggattctg |
227 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
40763994 |
atcagattcagtaggaggaggattctg |
40763968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 40763908 - 40763848
Alignment:
| Q |
167 |
ccttctcctgagcaacaagcttagcagcttcaacattagattcagtaggaggaggattctg |
227 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40763908 |
ccttctcctgaacaacaagcttagcagcttcaacatcagattcagtaggaggaggattctg |
40763848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 42911841 - 42911676
Alignment:
| Q |
1 |
tgaccagaaacagtcaaaaatgcttgacgggcaaagaaatctttagcataatctacctttccatcttttcgaggaataccgggctgaagtttagatcttt |
100 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
42911841 |
tgaccagaaacagtcaaaaacgcttgacgggcaaagaaatctttagtataatccacctttccgtcctttcgaggaataccgggctgaagtttagatcttt |
42911742 |
T |
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| Q |
101 |
cttccagcttggatacattccgtttagcctttttaagttcatccacagcagcagtaatctccttct |
166 |
Q |
| |
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| ||||||||||||||||| ||| || |||||||||||| ||||||||||| |||||||||||| |
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| T |
42911741 |
cctccagcttggatacattttcttttgcttttttaagttcagccacagcagcactaatctccttct |
42911676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 42911636 - 42911576
Alignment:
| Q |
167 |
ccttctcctgagcaacaagcttagcagcttcaacattagattcagtaggaggaggattctg |
227 |
Q |
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||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
42911636 |
ccttctcctgaacaacaagcttagcagcttcaacatcagcttcagttggaggaggattctg |
42911576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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