View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_low_22 (Length: 241)
Name: NF10074_low_22
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 39169170 - 39169374
Alignment:
| Q |
13 |
cagagaacactttacaagaccctctctctgttccattggaggagttgcaagattaaaaaatctaacctacgttgatgnnnnnnnnnnattccaataataa |
112 |
Q |
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| T |
39169170 |
cagagaacactttacaagaccctcc----gttccattggaggagttgcaagattaaaaaatataacttatgttgat--tttttttttattccaataataa |
39169263 |
T |
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| Q |
113 |
taagaacaagaagatgcttttcatttatattaggttctttcaatttgcaatttctgtttcatggttatgnnnnnnnactttccaataacaagaacaagac |
212 |
Q |
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| T |
39169264 |
taagaacaagaagatgcttttcatttatattaggttctttcaatttgcaatttctgtttcatgtttatgtttttttactttccaataacaagaacaagac |
39169363 |
T |
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| Q |
213 |
ataggttgttt |
223 |
Q |
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|||||| |||| |
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| T |
39169364 |
ataggtggttt |
39169374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 40418724 - 40418781
Alignment:
| Q |
122 |
gaagatgcttttcatttatattaggttctttcaatttgcaatttctgtttcatggttatg |
181 |
Q |
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| T |
40418724 |
gaagatgcttttcatttat--taggttctttctatttgcaatttttgtttcatgtttatg |
40418781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 38988162 - 38988203
Alignment:
| Q |
140 |
tattaggttctttcaatttgcaatttctgtttcatggttatg |
181 |
Q |
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| T |
38988162 |
tattaggttctttctatttgcaatttctgtttcatgtttatg |
38988203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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