View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10074_low_24 (Length: 229)

Name: NF10074_low_24
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10074_low_24
NF10074_low_24
[»] chr1 (14 HSPs)
chr1 (7-229)||(9097096-9097318)
chr1 (7-229)||(9105277-9105499)
chr1 (27-229)||(9056183-9056385)
chr1 (136-229)||(9143157-9143250)
chr1 (139-211)||(9082843-9082915)
chr1 (137-229)||(8964244-8964336)
chr1 (158-222)||(9433133-9433197)
chr1 (158-222)||(9454120-9454184)
chr1 (137-229)||(8874354-8874446)
chr1 (158-222)||(9486485-9486549)
chr1 (165-229)||(8999423-8999487)
chr1 (138-222)||(9318583-9318667)
chr1 (138-222)||(9319635-9319719)
chr1 (138-222)||(9349952-9350036)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 9097318 - 9097096
Alignment:
Q  7 ctaacaagtgtcaagaagtcaagaagtattctctaatagaggattactcatgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttgg 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  9097318 ctaacaagtgtcaagaactcaagaagtattctctaatagaggattactcatgttttcctccaaatcgctagaactaatgaagtcactggatgttgtttgg 9097219  T
Q  107 tctaagttggttgtttcacctcttgaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9097218 tctaagttggttgtttcacctcttgaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccgtcaagcatttcaa 9097119  T
Q  207 ctactttattcattgaggggcga 229  Q
    |||||||| ||||||||||||||    
T  9097118 ctactttactcattgaggggcga 9097096  T

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Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 9105499 - 9105277
Alignment:
Q  7 ctaacaagtgtcaagaagtcaagaagtattctctaatagaggattactcatgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||    
T  9105499 ctaacaagtgtcaagaagtcaagaagtattctctaatagaggattactcatgttttcccctgaatcgctagaactaatgaaatcacctgatgttgtttgg 9105400  T
Q  107 tctaagttggttgtttcacctcttgaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaa 206  Q
    || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  9105399 tcgaagctggttgtttcatctcttgaaattgtttcatctggatacatggtgggctctggaggcatttctatgcgttcaatatttccttcaagcatttcaa 9105300  T
Q  207 ctactttattcattgaggggcga 229  Q
    |||||||| ||||||||||||||    
T  9105299 ctactttactcattgaggggcga 9105277  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 9056183 - 9056385
Alignment:
Q  27 aagaagtattctctaatagaggattactcatgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttggtctaagttggttgtttcacc 126  Q
    ||||| ||||||||| |  |||| || | |||||||||||   ||| |||||||||||||||||||| |||  | |||||||  |||||||||||||| |    
T  9056183 aagaaatattctctagtgaaggactagttatgttttccccaatatcactagaactaatgaagtcacttgatactctttggtcggagttggttgtttcatc 9056282  T
Q  127 tcttgaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgagggg 226  Q
       ||||||  |||||||||||||||  || ||||| | ||||||||| | | |||||||||||||||||||||| || ||||||||| |||| ||||||    
T  9056283 cgatgaaatcatttcatctggatacaaagttggctccgaaggcatttcaaggttttcaatatctccttcaagcatctccactactttactcatggagggg 9056382  T
Q  227 cga 229  Q
    |||    
T  9056383 cga 9056385  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 9143250 - 9143157
Alignment:
Q  136 tgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcga 229  Q
    |||||||| |||||| ||| | |||| |||||||||||| | |||||||| ||||||||| ||||| || |||||||| |||||||||||||||    
T  9143250 tgtttcatgtggataaatgattggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactactttgttcattgaggggcga 9143157  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 9082915 - 9082843
Alignment:
Q  139 ttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactact 211  Q
    |||||||||||||||||| || |||||||||||||| |   |||||||||||||||||||||| || ||||||    
T  9082915 ttcatctggatacatggttggttctggaggcatttcaagagtttcaatatctccttcaagcatctccactact 9082843  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 8964244 - 8964336
Alignment:
Q  137 gtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcga 229  Q
    ||||||| |||||| | | | |||| |||||||||||| | |||||||| ||||||||| ||||| || ||||| || |||||||||||||||    
T  8964244 gtttcatgtggataaaggattggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactaccttgttcattgaggggcga 8964336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9433197 - 9433133
Alignment:
Q  158 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||| |||||||||||| ||  |||||||||||||||||||||| || |||||||| ||||||||    
T  9433197 ggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcattga 9433133  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9454184 - 9454120
Alignment:
Q  158 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||| |||||||||||| ||  |||||||||||||||||||||| || |||||||| ||||||||    
T  9454184 ggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcattga 9454120  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 8874446 - 8874354
Alignment:
Q  137 gtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcga 229  Q
    ||||||| |||||| | ||| |||| |||||||||||| | |||||||| ||||||||| ||||| || ||||| ||  ||||||| ||||||    
T  8874446 gtttcatgtggataaagggttggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactaccttgatcattgaagggcga 8874354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9486549 - 9486485
Alignment:
Q  158 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||| |||||| ||||| ||  |||||||||||||||||||||| || |||||||| ||||||||    
T  9486549 ggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcattga 9486485  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 8999423 - 8999487
Alignment:
Q  165 gaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcga 229  Q
    |||||||||| | |||||| | ||||||||| ||||| || ||||||||  ||||||||||||||    
T  8999423 gaggcatttcaaggctttctacatctccttcgagcatctccactactttgctcattgaggggcga 8999487  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 9318667 - 9318583
Alignment:
Q  138 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| ||||||||    
T  9318667 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattga 9318583  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 9319635 - 9319719
Alignment:
Q  138 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| ||||||||    
T  9319635 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattga 9319719  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 9349952 - 9350036
Alignment:
Q  138 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattga 222  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| ||||||||    
T  9349952 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattga 9350036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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